Analysis of interatomic Contacts of Structural Units in PDB entry:
9GP9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GP9 entry

There are 2 chains in PDB entry 9GP9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 30HIS 263
B
 LYS 36HIS 263
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 9GP9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 60Right-handed alpha
Helix 2
AA2
A
75 85Right-handed alpha
Helix 3
AA3
A
88 90Right-handed 310
Helix 4
AA4
A
101 106Right-handed alpha
Helix 5
AA5
A
110 116Right-handed alpha
Helix 6
AA6
A
129 134Right-handed 310
Helix 7
AA7
A
135 140Right-handed alpha
Helix 8
AA8
A
144 164Right-handed alpha
Helix 9
AA9
A
209 224Right-handed alpha
Helix 10
AB1
A
237 260Right-handed alpha
Helix 11
AB2
B
37 60Right-handed alpha
Helix 12
AB3
B
75 85Right-handed alpha
Helix 13
AB4
B
88 90Right-handed 310
Helix 14
AB5
B
101 106Right-handed alpha
Helix 15
AB6
B
110 117Right-handed alpha
Helix 16
AB7
B
129 134Right-handed 310
Helix 17
AB8
B
135 140Right-handed alpha
Helix 18
AB9
B
144 164Right-handed alpha
Helix 19
AC1
B
209 224Right-handed alpha
Helix 20
AC2
B
237 260Right-handed alpha
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There are 2 sheets in PDB entry 9GP9. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 96first strand
Strand 2
A
123 127parallel
Strand 3
A
63 70parallel
Strand 4
A
167 175parallel
Strand 5
A
230 234parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 96first strand
Strand 2
B
123 127parallel
Strand 3
B
63 70parallel
Strand 4
B
167 175parallel
Strand 5
B
230 234parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il