Analysis of interatomic Contacts of Structural Units in PDB entry:
9GPC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GPC entry

There is 1 chain in PDB entry 9GPC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LEU 564
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 9GPC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
166 180Right-handed alpha
Helix 2
AA2
A
207 225Right-handed alpha
Helix 3
AA3
A
236 239Right-handed 310
Helix 4
AA4
A
240 244Right-handed 310
Helix 5
AA5
A
248 252Right-handed 310
Helix 6
AA6
A
255 259Right-handed 310
Helix 7
AA7
A
264 270Right-handed 310
Helix 8
AA8
A
271 290Right-handed alpha
Helix 9
AA9
A
303 307Right-handed 310
Helix 10
AB1
A
313 332Right-handed alpha
Helix 11
AB2
A
348 353Right-handed alpha
Helix 12
AB3
A
369 382Right-handed alpha
Helix 13
AB4
A
383 385Right-handed 310
Helix 14
AB5
A
400 405Right-handed alpha
Helix 15
AB6
A
408 420Right-handed alpha
Helix 16
AB7
A
442 453Right-handed alpha
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There are 8 sheets in PDB entry 9GPC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 17first strand
Strand 2
A
28 38anti-parallel
Strand 3
A
79 94anti-parallel
Strand 4
A
66 76anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 23first strand
Strand 2
A
121 126parallel
Strand 3
A
100 110anti-parallel
Strand 4
A
47 55anti-parallel
Strand 5
A
60 64anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 23first strand
Strand 2
A
121 126parallel
Strand 3
A
100 110anti-parallel
Strand 4
A
115 117anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 136first strand
Strand 2
A
144 146anti-parallel
Strand 3
A
151 152anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 158first strand
Strand 2
A
184 188parallel
Strand 3
A
227 234parallel
Strand 4
A
295 302parallel
Strand 5
A
337 339parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 365first strand
Strand 2
A
388 394parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
463 464first strand
Strand 2
A
477 483anti-parallel
Strand 3
A
487 494anti-parallel
Strand 4
A
556 563anti-parallel
Strand 5
A
525 531anti-parallel
Strand 6
A
536 543anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
469 471first strand
Strand 2
A
508 518anti-parallel
Strand 3
A
547 553anti-parallel
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