Analysis of interatomic Contacts of Structural Units in PDB entry:
9GPI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GPI entry

There are 4 chains in PDB entry 9GPI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 PRO 0GLU 285
B
 MET 1GLU 285
C
 PRO 0ASN 283
A
 MET 1SER 282
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 9GPI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
11 22Right-handed alpha
Helix 2
AA2
D
39 51Right-handed alpha
Helix 3
AA3
D
65 69Right-handed 310
Helix 4
AA4
D
80 93Right-handed alpha
Helix 5
AA5
D
103 106Right-handed 310
Helix 6
AA6
D
124 141Right-handed alpha
Helix 7
AA7
D
165 177Right-handed alpha
Helix 8
AA8
D
193 199Right-handed alpha
Helix 9
AA9
D
199 204Right-handed alpha
Helix 10
AB1
D
220 232Right-handed alpha
Helix 11
AB2
D
235 237Right-handed 310
Helix 12
AB3
D
257 262Right-handed alpha
Helix 13
AB4
D
269 281Right-handed alpha
Helix 14
AB5
B
11 22Right-handed alpha
Helix 15
AB6
B
39 51Right-handed alpha
Helix 16
AB7
B
81 92Right-handed alpha
Helix 17
AB8
B
103 108Right-handed 310
Helix 18
AB9
B
124 141Right-handed alpha
Helix 19
AC1
B
165 177Right-handed alpha
Helix 20
AC2
B
193 199Right-handed alpha
Helix 21
AC3
B
200 206Right-handed 310
Helix 22
AC4
B
220 232Right-handed alpha
Helix 23
AC5
B
235 237Right-handed 310
Helix 24
AC6
B
257 263Right-handed alpha
Helix 25
AC7
B
269 281Right-handed alpha
Helix 26
AC8
C
11 22Right-handed alpha
Helix 27
AC9
C
39 51Right-handed alpha
Helix 28
AD1
C
79 92Right-handed alpha
Helix 29
AD2
C
103 106Right-handed 310
Helix 30
AD3
C
124 141Right-handed alpha
Helix 31
AD4
C
165 177Right-handed alpha
Helix 32
AD5
C
193 199Right-handed alpha
Helix 33
AD6
C
200 206Right-handed 310
Helix 34
AD7
C
220 232Right-handed alpha
Helix 35
AD8
C
235 237Right-handed 310
Helix 36
AD9
C
257 262Right-handed alpha
Helix 37
AE1
C
269 281Right-handed alpha
Helix 38
AE2
A
11 22Right-handed alpha
Helix 39
AE3
A
39 51Right-handed alpha
Helix 40
AE4
A
80 93Right-handed alpha
Helix 41
AE5
A
103 106Right-handed 310
Helix 42
AE6
A
124 141Right-handed alpha
Helix 43
AE7
A
165 177Right-handed alpha
Helix 44
AE8
A
193 199Right-handed alpha
Helix 45
AE9
A
199 205Right-handed alpha
Helix 46
AF1
A
220 232Right-handed alpha
Helix 47
AF2
A
235 237Right-handed 310
Helix 48
AF3
A
257 263Right-handed alpha
Helix 49
AF4
A
269 282Right-handed alpha
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There are 16 sheets in PDB entry 9GPI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
26 28first strand
Strand 2
D
3 7parallel
Strand 3
D
54 57parallel
Strand 4
D
95 101parallel
Strand 5
D
145 149parallel
Strand 6
D
209 212parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
151 153first strand
Strand 2
D
190 192parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
180 182first strand
Strand 2
D
239 241parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
186 187first strand
Strand 2
D
251 252parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 28first strand
Strand 2
B
3 7parallel
Strand 3
B
54 57parallel
Strand 4
B
95 101parallel
Strand 5
B
145 149parallel
Strand 6
B
209 212parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 153first strand
Strand 2
B
190 192parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
180 182first strand
Strand 2
B
239 241parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
186 187first strand
Strand 2
B
251 252parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
26 28first strand
Strand 2
C
3 7parallel
Strand 3
C
54 57parallel
Strand 4
C
95 101parallel
Strand 5
C
145 149parallel
Strand 6
C
209 212parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
151 153first strand
Strand 2
C
190 192parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
180 182first strand
Strand 2
C
239 241parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
186 187first strand
Strand 2
C
251 252parallel
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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 28first strand
Strand 2
A
3 7parallel
Strand 3
A
54 57parallel
Strand 4
A
95 101parallel
Strand 5
A
145 149parallel
Strand 6
A
209 212parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 153first strand
Strand 2
A
190 192parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 182first strand
Strand 2
A
239 241parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 187first strand
Strand 2
A
251 252parallel
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