Analysis of interatomic Contacts of Structural Units in PDB entry:
9GQO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GQO entry

There are 2 chains in PDB entry 9GQO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1THR 333
A
 LYS 335LYS 880
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 9GQO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 15Right-handed alpha
Helix 2
AA2
A
23 35Right-handed alpha
Helix 3
AA3
A
50 55Right-handed alpha
Helix 4
AA4
A
64 72Right-handed alpha
Helix 5
AA5
A
80 99Right-handed alpha
Helix 6
AA6
A
129 131Right-handed 310
Helix 7
AA7
A
161 164Right-handed 310
Helix 8
AA8
A
213 223Right-handed alpha
Helix 9
AA9
A
230 235Right-handed 310
Helix 10
AB1
A
236 255Right-handed alpha
Helix 11
AB2
A
258 263Right-handed alpha
Helix 12
AB3
A
273 290Right-handed alpha
Helix 13
AB4
A
291 311Right-handed alpha
Helix 14
AB5
A
323 328Right-handed alpha
Helix 15
AB6
A
334 339Right-handed alpha
Helix 16
AB7
A
362 366Right-handed 310
Helix 17
AB8
A
369 380Right-handed alpha
Helix 18
AB9
A
394 407Right-handed alpha
Helix 19
AC1
A
410 418Right-handed alpha
Helix 20
AC2
A
450 458Right-handed alpha
Helix 21
AC3
A
474 488Right-handed alpha
Helix 22
AC4
A
529 541Right-handed alpha
Helix 23
AC5
A
552 562Right-handed alpha
Helix 24
AC6
A
575 579Right-handed alpha
Helix 25
AC7
A
582 591Right-handed alpha
Helix 26
AC8
A
600 614Right-handed alpha
Helix 27
AC9
A
624 626Right-handed 310
Helix 28
AD1
A
627 634Right-handed alpha
Helix 29
AD2
A
644 651Right-handed alpha
Helix 30
AD3
A
660 701Right-handed alpha
Helix 31
AD4
A
708 720Right-handed alpha
Helix 32
AD5
A
721 728Right-handed alpha
Helix 33
AD6
A
750 776Right-handed alpha
Helix 34
AD7
A
782 798Right-handed alpha
Helix 35
AD8
A
798 803Right-handed alpha
Helix 36
AD9
A
817 836Right-handed alpha
Helix 37
AE1
A
853 877Right-handed alpha
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There are 6 sheets in PDB entry 9GQO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 119first strand
Strand 2
A
122 127anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 139first strand
Strand 2
A
202 208anti-parallel
Strand 3
A
148 153anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 173first strand
Strand 2
A
157 160anti-parallel
Strand 3
A
196 199anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
573 574first strand
Strand 2
A
595 597parallel
Strand 3
A
544 549parallel
Strand 4
A
330 333parallel
Strand 5
A
618 622parallel
Strand 6
A
636 640parallel
Strand 7
A
654 655parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
345 350first strand
Strand 2
A
516 524anti-parallel
Strand 3
A
493 498anti-parallel
Strand 4
A
442 449anti-parallel
Strand 5
A
432 439anti-parallel
Strand 6
A
423 424anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
345 350first strand
Strand 2
A
516 524anti-parallel
Strand 3
A
460 461parallel
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