Analysis of interatomic Contacts of Structural Units in PDB entry:
9GR0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GR0 entry

There are 4 chains in PDB entry 9GR0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 232	ILE 239
F	CYS 232	ILE 239
B	ALA 128	ILE 610
C	PRO 129	HIS 611

There are 28 helices in PDB entry 9GR0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	140	154	Right-handed alpha
Helix 2	AA2	B	172	176	Right-handed 310
Helix 3	AA3	B	177	182	Right-handed alpha
Helix 4	AA4	B	186	191	Right-handed alpha
Helix 5	AA5	B	207	211	Right-handed 310
Helix 6	AA6	B	267	272	Right-handed alpha
Helix 7	AA7	B	274	280	Right-handed alpha
Helix 8	AA8	B	286	300	Right-handed alpha
Helix 9	AA9	B	309	326	Right-handed alpha
Helix 10	AB1	B	345	360	Right-handed alpha
Helix 11	AB2	B	405	411	Right-handed alpha
Helix 12	AB3	B	454	471	Right-handed alpha
Helix 13	AB4	B	584	594	Right-handed alpha
Helix 14	AB5	B	601	607	Right-handed alpha
Helix 15	AB6	C	140	154	Right-handed alpha
Helix 16	AB7	C	172	176	Right-handed 310
Helix 17	AB8	C	186	191	Right-handed alpha
Helix 18	AB9	C	207	211	Right-handed 310
Helix 19	AC1	C	216	220	Right-handed 310
Helix 20	AC2	C	267	272	Right-handed alpha
Helix 21	AC3	C	274	280	Right-handed alpha
Helix 22	AC4	C	286	300	Right-handed alpha
Helix 23	AC5	C	309	326	Right-handed alpha
Helix 24	AC6	C	345	359	Right-handed alpha
Helix 25	AC7	C	404	408	Right-handed 310
Helix 26	AC8	C	454	470	Right-handed alpha
Helix 27	AC9	C	584	594	Right-handed alpha
Helix 28	AD1	C	601	606	Right-handed alpha

There are 16 sheets in PDB entry 9GR0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	239	first strand
Strand 2	C	504	509	parallel
Strand 3	C	563	568	anti-parallel
Strand 4	C	573	579	anti-parallel
Strand 5	C	491	496	anti-parallel
Strand 6	C	481	485	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	234	239	first strand
Strand 2	B	504	509	parallel
Strand 3	B	563	568	anti-parallel
Strand 4	B	573	579	anti-parallel
Strand 5	B	491	496	anti-parallel
Strand 6	B	481	485	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	229	first strand
Strand 2	B	158	163	parallel
Strand 3	B	131	137	parallel
Strand 4	B	250	258	parallel
Strand 5	B	242	244	anti-parallel
Strand 6	B	235	237	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	229	first strand
Strand 2	B	158	163	parallel
Strand 3	B	131	137	parallel
Strand 4	B	250	258	parallel
Strand 5	B	433	435	parallel
Strand 6	B	428	430	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	193	first strand
Strand 2	B	201	202	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	264	first strand
Strand 2	B	400	402	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	362	364	first strand
Strand 2	B	329	333	parallel
Strand 3	B	302	306	parallel
Strand 4	B	393	396	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	369	375	first strand
Strand 2	B	378	383	anti-parallel
Strand 3	B	388	391	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	421	422	first strand
Strand 2	B	440	444	parallel
Strand 3	B	448	450	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	224	229	first strand
Strand 2	C	158	163	parallel
Strand 3	C	131	137	parallel
Strand 4	C	250	258	parallel
Strand 5	C	242	245	anti-parallel
Strand 6	C	233	237	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	224	229	first strand
Strand 2	C	158	163	parallel
Strand 3	C	131	137	parallel
Strand 4	C	250	258	parallel
Strand 5	C	433	435	parallel
Strand 6	C	428	430	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	192	194	first strand
Strand 2	C	200	202	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	262	264	first strand
Strand 2	C	400	402	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	281	282	first strand
Strand 2	C	393	396	parallel
Strand 3	C	302	306	parallel
Strand 4	C	329	333	parallel
Strand 5	C	362	364	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	369	375	first strand
Strand 2	C	378	383	anti-parallel
Strand 3	C	388	391	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	421	422	first strand
Strand 2	C	440	443	parallel
Strand 3	C	449	450	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GR0

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GR0