Analysis of interatomic Contacts of Structural Units in PDB entry:
9GR8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GR8 entry

There is 1 chain in PDB entry 9GR8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 184ASP 520
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 9GR8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
195 200Right-handed alpha
Helix 2
AA2
A
201 213Right-handed alpha
Helix 3
AA3
A
223 230Right-handed alpha
Helix 4
AA4
A
231 235Right-handed 310
Helix 5
AA5
A
250 262Right-handed alpha
Helix 6
AA6
A
269 276Right-handed 310
Helix 7
AA7
A
277 288Right-handed alpha
Helix 8
AA8
A
307 317Right-handed alpha
Helix 9
AA9
A
365 369Right-handed 310
Helix 10
AB1
A
407 409Right-handed 310
Helix 11
AB2
A
453 468Right-handed alpha
Helix 12
AB3
A
497 520Right-handed alpha
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There are 4 sheets in PDB entry 9GR8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 221first strand
Strand 2
A
188 193parallel
Strand 3
A
240 243parallel
Strand 4
A
264 265parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
295 298first strand
Strand 2
A
399 403anti-parallel
Strand 3
A
348 352anti-parallel
Strand 4
A
361 363anti-parallel
Strand 5
A
372 378anti-parallel
Strand 6
A
381 387anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 333first strand
Strand 2
A
336 339anti-parallel
Strand 3
A
342 345anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
448 449first strand
Strand 2
A
423 429anti-parallel
Strand 3
A
411 418anti-parallel
Strand 4
A
471 479anti-parallel
Strand 5
A
482 490anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il