Analysis of interatomic Contacts of Structural Units in PDB entry:
9GRC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GRC entry

There are 5 chains in PDB entry 9GRC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 TYR 2ARG 397
E
 PRO 4SER 412
F
 LYS 3SER 228
D
 LYS 3SER 228
V
 CYS 1LEU 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 9GRC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
5 13Right-handed alpha
Helix 2
AA2
C
22 28Right-handed alpha
Helix 3
AA3
C
28 59Right-handed alpha
Helix 4
AA4
C
60 63Right-handed 310
Helix 5
AA5
C
81 85Right-handed 310
Helix 6
AA6
C
133 137Right-handed 310
Helix 7
AA7
C
148 155Right-handed alpha
Helix 8
AA8
C
194 198Right-handed 310
Helix 9
AA9
C
231 236Right-handed alpha
Helix 10
AB1
C
255 293Right-handed alpha
Helix 11
AB2
C
293 304Right-handed alpha
Helix 12
AB3
C
306 337Right-handed alpha
Helix 13
AB4
C
361 379Right-handed alpha
Helix 14
AB5
C
380 390Right-handed alpha
Helix 15
AB6
C
391 396Right-handed alpha
Helix 16
AB7
E
11 16Right-handed alpha
Helix 17
AB8
E
22 59Right-handed alpha
Helix 18
AB9
E
77 87Right-handed alpha
Helix 19
AC1
E
128 133Right-handed 310
Helix 20
AC2
E
152 159Right-handed alpha
Helix 21
AC3
E
199 202Right-handed 310
Helix 22
AC4
E
208 215Right-handed alpha
Helix 23
AC5
E
230 232Right-handed 310
Helix 24
AC6
E
233 242Right-handed alpha
Helix 25
AC7
E
254 298Right-handed alpha
Helix 26
AC8
E
298 309Right-handed alpha
Helix 27
AC9
E
311 344Right-handed alpha
Helix 28
AD1
E
344 357Right-handed alpha
Helix 29
AD2
E
378 395Right-handed alpha
Helix 30
AD3
E
396 403Right-handed alpha
Helix 31
AD4
F
47 56Right-handed alpha
Helix 32
AD5
F
77 89Right-handed alpha
Helix 33
AD6
F
103 109Right-handed alpha
Helix 34
AD7
F
109 115Right-handed alpha
Helix 35
AD8
F
125 134Right-handed alpha
Helix 36
AD9
F
135 139Right-handed 310
Helix 37
AE1
F
150 160Right-handed alpha
Helix 38
AE2
F
182 195Right-handed alpha
Helix 39
AE3
D
47 56Right-handed alpha
Helix 40
AE4
D
77 89Right-handed alpha
Helix 41
AE5
D
103 116Right-handed alpha
Helix 42
AE6
D
121 134Right-handed alpha
Helix 43
AE7
D
135 139Right-handed 310
Helix 44
AE8
D
151 160Right-handed alpha
Helix 45
AE9
D
182 195Right-handed alpha
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There are 10 sheets in PDB entry 9GRC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
161 162first strand
Strand 2
C
184 190anti-parallel
Strand 3
C
143 147parallel
Strand 4
C
200 204anti-parallel
Strand 5
C
111 117parallel
Strand 6
C
90 102anti-parallel
Strand 7
C
221 226anti-parallel
Strand 8
C
66 69anti-parallel
Strand 9
C
245 248anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
165 166first strand
Strand 2
C
180 181anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
165 170first strand
Strand 2
E
183 193anti-parallel
Strand 3
E
147 151parallel
Strand 4
E
204 207anti-parallel
Strand 5
E
115 118parallel
Strand 6
E
91 99anti-parallel
Strand 7
E
223 228anti-parallel
Strand 8
E
66 68anti-parallel
Strand 9
E
252 253anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
104 105first strand
Strand 2
E
110 111anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
31 32first strand
Strand 2
F
6 9anti-parallel
Strand 3
F
65 68anti-parallel
Strand 4
F
71 72anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
14 16first strand
Strand 2
F
21 23anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
38 41first strand
Strand 2
F
198 203parallel
Strand 3
F
166 170parallel
Strand 4
F
91 92parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
31 32first strand
Strand 2
D
6 9anti-parallel
Strand 3
D
65 68anti-parallel
Strand 4
D
71 72anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
14 16first strand
Strand 2
D
21 23anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
38 41first strand
Strand 2
D
198 203parallel
Strand 3
D
166 170parallel
Strand 4
D
91 92parallel
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