Analysis of interatomic Contacts of Structural Units in PDB entry:
9GRH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GRH entry

There are 2 chains in PDB entry 9GRH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 536	ARG 1088
B	ALA 535	LEU 660

There are 78 helices in PDB entry 9GRH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	563	569	Right-handed alpha
Helix 2	AA2	A	581	598	Right-handed alpha
Helix 3	AA3	A	602	617	Right-handed alpha
Helix 4	AA4	A	652	672	Right-handed alpha
Helix 5	AA5	A	673	677	Right-handed 310
Helix 6	AA6	A	686	701	Right-handed alpha
Helix 7	AA7	A	714	719	Right-handed alpha
Helix 8	AA8	A	721	740	Right-handed alpha
Helix 9	AA9	A	757	783	Right-handed alpha
Helix 10	AB1	A	784	788	Right-handed 310
Helix 11	AB2	A	797	812	Right-handed alpha
Helix 12	AB3	A	814	818	Right-handed 310
Helix 13	AB4	A	819	837	Right-handed alpha
Helix 14	AB5	A	837	845	Right-handed alpha
Helix 15	AB6	A	922	924	Right-handed 310
Helix 16	AB7	A	925	947	Right-handed alpha
Helix 17	AB8	A	950	979	Right-handed alpha
Helix 18	AB9	A	990	1004	Right-handed alpha
Helix 19	AC1	A	1080	1088	Right-handed alpha
Helix 20	AC2	B	563	569	Right-handed alpha
Helix 21	AC3	B	581	598	Right-handed alpha
Helix 22	AC4	B	602	617	Right-handed alpha
Helix 23	AC5	B	652	672	Right-handed alpha
Helix 24	AC6	B	673	677	Right-handed 310
Helix 25	AC7	B	686	701	Right-handed alpha
Helix 26	AC8	B	714	719	Right-handed alpha
Helix 27	AC9	B	721	740	Right-handed alpha
Helix 28	AD1	B	757	783	Right-handed alpha
Helix 29	AD2	B	784	788	Right-handed 310
Helix 30	AD3	B	797	812	Right-handed alpha
Helix 31	AD4	B	814	818	Right-handed 310
Helix 32	AD5	B	819	837	Right-handed alpha
Helix 33	AD6	B	837	845	Right-handed alpha
Helix 34	AD7	B	922	924	Right-handed 310
Helix 35	AD8	B	925	943	Right-handed alpha
Helix 36	AD9	B	944	948	Right-handed 310
Helix 37	AE1	B	950	979	Right-handed alpha
Helix 38	AE2	B	990	1004	Right-handed alpha
Helix 39	AE3	B	1080	1088	Right-handed alpha
Helix 40	AE4	C	563	569	Right-handed alpha
Helix 41	AE5	C	581	598	Right-handed alpha
Helix 42	AE6	C	602	617	Right-handed alpha
Helix 43	AE7	C	652	672	Right-handed alpha
Helix 44	AE8	C	673	677	Right-handed 310
Helix 45	AE9	C	686	701	Right-handed alpha
Helix 46	AF1	C	714	719	Right-handed alpha
Helix 47	AF2	C	721	740	Right-handed alpha
Helix 48	AF3	C	757	783	Right-handed alpha
Helix 49	AF4	C	784	788	Right-handed 310
Helix 50	AF5	C	797	812	Right-handed alpha
Helix 51	AF6	C	814	818	Right-handed 310
Helix 52	AF7	C	819	837	Right-handed alpha
Helix 53	AF8	C	837	845	Right-handed alpha
Helix 54	AF9	C	922	924	Right-handed 310
Helix 55	AG1	C	925	943	Right-handed alpha
Helix 56	AG2	C	944	948	Right-handed 310
Helix 57	AG3	C	950	979	Right-handed alpha
Helix 58	AG4	C	990	1004	Right-handed alpha
Helix 59	AG5	C	1080	1088	Right-handed alpha
Helix 60	AG6	D	563	569	Right-handed alpha
Helix 61	AG7	D	581	599	Right-handed alpha
Helix 62	AG8	D	602	617	Right-handed alpha
Helix 63	AG9	D	652	672	Right-handed alpha
Helix 64	AH1	D	673	677	Right-handed 310
Helix 65	AH2	D	686	701	Right-handed alpha
Helix 66	AH3	D	714	719	Right-handed alpha
Helix 67	AH4	D	721	740	Right-handed alpha
Helix 68	AH5	D	757	783	Right-handed alpha
Helix 69	AH6	D	784	788	Right-handed 310
Helix 70	AH7	D	797	812	Right-handed alpha
Helix 71	AH8	D	814	818	Right-handed 310
Helix 72	AH9	D	819	837	Right-handed alpha
Helix 73	AI1	D	837	845	Right-handed alpha
Helix 74	AI2	D	922	924	Right-handed 310
Helix 75	AI3	D	925	947	Right-handed alpha
Helix 76	AI4	D	950	979	Right-handed alpha
Helix 77	AI5	D	990	1004	Right-handed alpha
Helix 78	AI6	D	1080	1088	Right-handed alpha

There are 12 sheets in PDB entry 9GRH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	711	713	first strand
Strand 2	A	679	683	parallel
Strand 3	A	983	989	parallel
Strand 4	A	537	547	parallel
Strand 5	A	1023	1031	anti-parallel
Strand 6	A	1041	1047	anti-parallel
Strand 7	A	1072	1073	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	711	713	first strand
Strand 2	A	679	683	parallel
Strand 3	A	983	989	parallel
Strand 4	A	537	547	parallel
Strand 5	A	1023	1031	anti-parallel
Strand 6	A	1041	1047	anti-parallel
Strand 7	A	1078	1079	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	555	561	first strand
Strand 2	A	636	645	anti-parallel
Strand 3	A	623	630	anti-parallel
Strand 4	A	577	579	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	713	first strand
Strand 2	B	679	683	parallel
Strand 3	B	983	989	parallel
Strand 4	B	537	547	parallel
Strand 5	B	1023	1031	anti-parallel
Strand 6	B	1041	1047	anti-parallel
Strand 7	B	1072	1073	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	713	first strand
Strand 2	B	679	683	parallel
Strand 3	B	983	989	parallel
Strand 4	B	537	547	parallel
Strand 5	B	1023	1031	anti-parallel
Strand 6	B	1041	1047	anti-parallel
Strand 7	B	1078	1079	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	555	561	first strand
Strand 2	B	636	645	anti-parallel
Strand 3	B	623	630	anti-parallel
Strand 4	B	577	579	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	711	713	first strand
Strand 2	C	679	683	parallel
Strand 3	C	983	989	parallel
Strand 4	C	537	547	parallel
Strand 5	C	1023	1031	anti-parallel
Strand 6	C	1041	1047	anti-parallel
Strand 7	C	1072	1073	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	711	713	first strand
Strand 2	C	679	683	parallel
Strand 3	C	983	989	parallel
Strand 4	C	537	547	parallel
Strand 5	C	1023	1031	anti-parallel
Strand 6	C	1041	1047	anti-parallel
Strand 7	C	1078	1079	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	555	561	first strand
Strand 2	C	636	645	anti-parallel
Strand 3	C	623	630	anti-parallel
Strand 4	C	577	579	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	711	713	first strand
Strand 2	D	679	683	parallel
Strand 3	D	983	989	parallel
Strand 4	D	537	547	parallel
Strand 5	D	1023	1031	anti-parallel
Strand 6	D	1041	1047	anti-parallel
Strand 7	D	1072	1073	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	711	713	first strand
Strand 2	D	679	683	parallel
Strand 3	D	983	989	parallel
Strand 4	D	537	547	parallel
Strand 5	D	1023	1031	anti-parallel
Strand 6	D	1041	1047	anti-parallel
Strand 7	D	1078	1079	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	555	561	first strand
Strand 2	D	636	645	anti-parallel
Strand 3	D	623	630	anti-parallel
Strand 4	D	577	579	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GRH

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GRH