Analysis of interatomic Contacts of Structural Units in PDB entry:
9GRO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GRO entry

There are 2 chains in PDB entry 9GRO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 537ARG 1093
B
 GLY 534VAL 1094
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 9GRO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
563 569Right-handed alpha
Helix 2
AA2
A
581 599Right-handed alpha
Helix 3
AA3
A
602 617Right-handed alpha
Helix 4
AA4
A
652 672Right-handed alpha
Helix 5
AA5
A
673 677Right-handed 310
Helix 6
AA6
A
686 702Right-handed alpha
Helix 7
AA7
A
714 719Right-handed alpha
Helix 8
AA8
A
724 741Right-handed alpha
Helix 9
AA9
A
757 783Right-handed alpha
Helix 10
AB1
A
784 788Right-handed 310
Helix 11
AB2
A
797 812Right-handed alpha
Helix 12
AB3
A
820 837Right-handed alpha
Helix 13
AB4
A
837 845Right-handed alpha
Helix 14
AB5
A
925 942Right-handed alpha
Helix 15
AB6
A
943 948Right-handed 310
Helix 16
AB7
A
950 979Right-handed alpha
Helix 17
AB8
A
990 1004Right-handed alpha
Helix 18
AB9
A
1080 1090Right-handed alpha
Helix 19
AC1
A
1091 1093Right-handed 310
Helix 20
AC2
B
563 568Right-handed alpha
Helix 21
AC3
B
581 598Right-handed alpha
Helix 22
AC4
B
602 617Right-handed alpha
Helix 23
AC5
B
652 672Right-handed alpha
Helix 24
AC6
B
674 677Right-handed 310
Helix 25
AC7
B
686 701Right-handed alpha
Helix 26
AC8
B
707 711Right-handed 310
Helix 27
AC9
B
714 719Right-handed alpha
Helix 28
AD1
B
724 736Right-handed alpha
Helix 29
AD2
B
737 740Right-handed 310
Helix 30
AD3
B
757 783Right-handed alpha
Helix 31
AD4
B
784 788Right-handed 310
Helix 32
AD5
B
797 812Right-handed alpha
Helix 33
AD6
B
819 837Right-handed alpha
Helix 34
AD7
B
837 845Right-handed alpha
Helix 35
AD8
B
925 943Right-handed alpha
Helix 36
AD9
B
944 948Right-handed 310
Helix 37
AE1
B
950 979Right-handed alpha
Helix 38
AE2
B
990 1004Right-handed alpha
Helix 39
AE3
B
1011 1015Right-handed 310
Helix 40
AE4
B
1080 1092Right-handed alpha
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There are 6 sheets in PDB entry 9GRO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
711 713first strand
Strand 2
A
679 683parallel
Strand 3
A
983 989parallel
Strand 4
A
538 547parallel
Strand 5
A
1023 1031anti-parallel
Strand 6
A
1039 1047anti-parallel
Strand 7
A
1072 1073anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
711 713first strand
Strand 2
A
679 683parallel
Strand 3
A
983 989parallel
Strand 4
A
538 547parallel
Strand 5
A
1023 1031anti-parallel
Strand 6
A
1039 1047anti-parallel
Strand 7
A
1078 1079anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
554 561first strand
Strand 2
A
636 646anti-parallel
Strand 3
A
623 630anti-parallel
Strand 4
A
577 579anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
712 713first strand
Strand 2
B
679 683parallel
Strand 3
B
983 989parallel
Strand 4
B
538 547parallel
Strand 5
B
1023 1032anti-parallel
Strand 6
B
1038 1047anti-parallel
Strand 7
B
1072 1073anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
712 713first strand
Strand 2
B
679 683parallel
Strand 3
B
983 989parallel
Strand 4
B
538 547parallel
Strand 5
B
1023 1032anti-parallel
Strand 6
B
1038 1047anti-parallel
Strand 7
B
1078 1079anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
554 561first strand
Strand 2
B
639 646anti-parallel
Strand 3
B
623 627anti-parallel
Strand 4
B
577 579anti-parallel
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