Analysis of interatomic Contacts of Structural Units in PDB entry:
9GRW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GRW entry

There are 2 chains in PDB entry 9GRW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 7GLU 376
B
 GLU 8PRO 266
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 9GRW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 29Right-handed 310
Helix 2
AA2
A
90 95Right-handed 310
Helix 3
AA3
A
100 109Right-handed alpha
Helix 4
AA4
A
110 115Right-handed 310
Helix 5
AA5
A
168 176Right-handed alpha
Helix 6
AA6
A
283 285Right-handed 310
Helix 7
AA7
A
304 307Right-handed 310
Helix 8
AA8
B
25 29Right-handed 310
Helix 9
AA9
B
90 95Right-handed 310
Helix 10
AB1
B
100 109Right-handed alpha
Helix 11
AB2
B
110 115Right-handed 310
Helix 12
AB3
B
168 176Right-handed alpha
Helix 13
AB4
B
283 285Right-handed 310
Helix 14
AB5
B
304 307Right-handed 310
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There are 9 sheets in PDB entry 9GRW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 12first strand
Strand 2
A
45 53anti-parallel
Strand 3
A
56 63anti-parallel
Strand 4
A
364 373anti-parallel
Strand 5
A
125 132anti-parallel
Strand 6
A
290 298anti-parallel
Strand 7
A
313 322anti-parallel
Strand 8
A
327 338anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 38first strand
Strand 2
A
78 85anti-parallel
Strand 3
A
349 356anti-parallel
Strand 4
A
143 149anti-parallel
Strand 5
A
227 232anti-parallel
Strand 6
A
235 243anti-parallel
Strand 7
A
272 281anti-parallel
Strand 8
A
267 268anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 71first strand
Strand 2
A
78 85anti-parallel
Strand 3
A
349 356anti-parallel
Strand 4
A
143 149anti-parallel
Strand 5
A
227 232anti-parallel
Strand 6
A
235 243anti-parallel
Strand 7
A
341 342parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 182first strand
Strand 2
A
185 191anti-parallel
Strand 3
A
209 219anti-parallel
Strand 4
A
156 158anti-parallel
Strand 5
A
164 167anti-parallel
Strand 6
B
164 167anti-parallel
Strand 7
B
156 158anti-parallel
Strand 8
B
209 219anti-parallel
Strand 9
B
185 191anti-parallel
Strand 10
B
179 182anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 302first strand
Strand 2
A
309 311anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
45 53anti-parallel
Strand 3
B
56 63anti-parallel
Strand 4
B
364 374anti-parallel
Strand 5
B
125 132anti-parallel
Strand 6
B
290 298anti-parallel
Strand 7
B
313 322anti-parallel
Strand 8
B
327 338anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 38first strand
Strand 2
B
78 85anti-parallel
Strand 3
B
349 356anti-parallel
Strand 4
B
143 149anti-parallel
Strand 5
B
227 232anti-parallel
Strand 6
B
235 243anti-parallel
Strand 7
B
272 281anti-parallel
Strand 8
B
267 268anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 71first strand
Strand 2
B
78 85anti-parallel
Strand 3
B
349 356anti-parallel
Strand 4
B
143 149anti-parallel
Strand 5
B
227 232anti-parallel
Strand 6
B
235 243anti-parallel
Strand 7
B
341 342parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
301 302first strand
Strand 2
B
309 311anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il