Analysis of interatomic Contacts of Structural Units in PDB entry:
9GS7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GS7 entry

There are 2 chains in PDB entry 9GS7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 7LYS 315
B
 ASP 1GLN 612
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 9GS7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 38Right-handed alpha
Helix 2
AA2
A
42 47Right-handed 310
Helix 3
AA3
A
51 74Right-handed alpha
Helix 4
AA4
A
83 104Right-handed alpha
Helix 5
AA5
A
120 131Right-handed alpha
Helix 6
AA6
A
137 156Right-handed alpha
Helix 7
AA7
A
173 197Right-handed alpha
Helix 8
AA8
A
200 221Right-handed alpha
Helix 9
AA9
A
225 236Right-handed alpha
Helix 10
AB1
A
237 264Right-handed alpha
Helix 11
AB2
A
265 289Right-handed alpha
Helix 12
AB3
A
293 312Right-handed alpha
Helix 13
AB4
B
573 577Right-handed 310
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There are 6 sheets in PDB entry 9GS7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 6first strand
Strand 2
B
19 25anti-parallel
Strand 3
B
74 79anti-parallel
Strand 4
B
66 71anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
106 110parallel
Strand 3
B
89 94anti-parallel
Strand 4
B
37 42anti-parallel
Strand 5
B
49 53anti-parallel
Strand 6
B
57 58anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
106 110parallel
Strand 3
B
89 94anti-parallel
Strand 4
B
101 102anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
489 493first strand
Strand 2
B
504 511anti-parallel
Strand 3
B
564 569anti-parallel
Strand 4
B
554 559anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
497 498first strand
Strand 2
B
600 604parallel
Strand 3
B
578 587anti-parallel
Strand 4
B
520 527anti-parallel
Strand 5
B
531 538anti-parallel
Strand 6
B
544 546anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
497 498first strand
Strand 2
B
600 604parallel
Strand 3
B
578 587anti-parallel
Strand 4
B
591 596anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il