Analysis of interatomic Contacts of Structural Units in PDB entry:
9GSE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GSE entry

There are 2 chains in PDB entry 9GSE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 29ARG 1043
B
 LYS 147GLU 360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 9GSE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 35Right-handed alpha
Helix 2
AA2
A
41 50Right-handed alpha
Helix 3
AA3
A
52 60Right-handed alpha
Helix 4
AA4
A
71 81Right-handed alpha
Helix 5
AA5
A
94 103Right-handed alpha
Helix 6
AA6
A
105 122Right-handed alpha
Helix 7
AA7
A
150 189Right-handed alpha
Helix 8
AA8
A
204 208Right-handed 310
Helix 9
AA9
A
238 243Right-handed alpha
Helix 10
AB1
A
276 280Right-handed 310
Helix 11
AB2
A
282 289Right-handed alpha
Helix 12
AB3
A
340 377Right-handed alpha
Helix 13
AB4
A
387 410Right-handed alpha
Helix 14
AB5
A
416 424Right-handed alpha
Helix 15
AB6
A
425 430Right-handed alpha
Helix 16
AB7
A
440 445Right-handed alpha
Helix 17
AB8
A
446 448Right-handed 310
Helix 18
AB9
A
481 485Right-handed 310
Helix 19
AC1
A
488 501Right-handed alpha
Helix 20
AC2
A
522 535Right-handed alpha
Helix 21
AC3
A
539 545Right-handed alpha
Helix 22
AC4
A
547 549Right-handed 310
Helix 23
AC5
A
584 589Right-handed alpha
Helix 24
AC6
A
604 623Right-handed alpha
Helix 25
AC7
A
644 649Right-handed alpha
Helix 26
AC8
A
667 678Right-handed alpha
Helix 27
AC9
A
689 701Right-handed alpha
Helix 28
AD1
A
713 722Right-handed alpha
Helix 29
AD2
A
729 734Right-handed alpha
Helix 30
AD3
A
735 740Right-handed 310
Helix 31
AD4
A
747 760Right-handed alpha
Helix 32
AD5
A
779 786Right-handed alpha
Helix 33
AD6
A
797 803Right-handed alpha
Helix 34
AD7
A
812 850Right-handed alpha
Helix 35
AD8
A
850 855Right-handed alpha
Helix 36
AD9
A
861 881Right-handed alpha
Helix 37
AE1
A
886 891Right-handed 310
Helix 38
AE2
A
903 927Right-handed alpha
Helix 39
AE3
A
927 933Right-handed alpha
Helix 40
AE4
A
947 968Right-handed alpha
Helix 41
AE5
A
984 1004Right-handed alpha
Helix 42
AE6
A
1015 1037Right-handed alpha
Helix 43
AE7
B
208 212Right-handed 310
Helix 44
AE8
B
338 360Right-handed alpha
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There are 9 sheets in PDB entry 9GSE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 203first strand
Strand 2
A
192 196anti-parallel
Strand 3
A
213 216anti-parallel
Strand 4
A
263 275anti-parallel
Strand 5
A
225 237anti-parallel
Strand 6
A
247 249anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 203first strand
Strand 2
A
192 196anti-parallel
Strand 3
A
213 216anti-parallel
Strand 4
A
263 275anti-parallel
Strand 5
A
225 237anti-parallel
Strand 6
A
257 258anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
434 436first strand
Strand 2
A
806 808anti-parallel
Strand 3
A
788 792parallel
Strand 4
A
770 772parallel
Strand 5
A
450 454parallel
Strand 6
A
681 685parallel
Strand 7
A
742 743parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
474 476first strand
Strand 2
A
465 471anti-parallel
Strand 3
A
652 661anti-parallel
Strand 4
A
625 635anti-parallel
Strand 5
A
574 581anti-parallel
Strand 6
A
563 568anti-parallel
Strand 7
A
551 555anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
474 476first strand
Strand 2
A
465 471anti-parallel
Strand 3
A
652 661anti-parallel
Strand 4
A
590 593parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 152first strand
Strand 2
B
165 173anti-parallel
Strand 3
B
199 204anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 157first strand
Strand 2
B
231 242parallel
Strand 3
B
214 221anti-parallel
Strand 4
B
178 185anti-parallel
Strand 5
B
188 189anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 157first strand
Strand 2
B
231 242parallel
Strand 3
B
254 263anti-parallel
Strand 4
B
297 301anti-parallel
Strand 5
B
288 292anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
245 249first strand
Strand 2
B
326 333parallel
Strand 3
B
311 315anti-parallel
Strand 4
B
270 274anti-parallel
Strand 5
B
277 280anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il