Analysis of interatomic Contacts of Structural Units in PDB entry:
9GSH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GSH entry

There are 2 chains in PDB entry 9GSH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 27	SER 1042
B	LYS 147	GLU 360

There are 41 helices in PDB entry 9GSH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	36	Right-handed alpha
Helix 2	AA2	A	40	50	Right-handed alpha
Helix 3	AA3	A	52	57	Right-handed alpha
Helix 4	AA4	A	71	79	Right-handed alpha
Helix 5	AA5	A	94	104	Right-handed alpha
Helix 6	AA6	A	105	123	Right-handed alpha
Helix 7	AA7	A	150	183	Right-handed alpha
Helix 8	AA8	A	238	243	Right-handed alpha
Helix 9	AA9	A	280	289	Right-handed alpha
Helix 10	AB1	A	340	377	Right-handed alpha
Helix 11	AB2	A	384	386	Right-handed 310
Helix 12	AB3	A	387	410	Right-handed alpha
Helix 13	AB4	A	413	430	Right-handed alpha
Helix 14	AB5	A	440	445	Right-handed alpha
Helix 15	AB6	A	446	448	Right-handed 310
Helix 16	AB7	A	489	499	Right-handed alpha
Helix 17	AB8	A	522	535	Right-handed alpha
Helix 18	AB9	A	539	544	Right-handed alpha
Helix 19	AC1	A	586	588	Right-handed 310
Helix 20	AC2	A	604	615	Right-handed alpha
Helix 21	AC3	A	615	622	Right-handed alpha
Helix 22	AC4	A	644	649	Right-handed alpha
Helix 23	AC5	A	667	678	Right-handed alpha
Helix 24	AC6	A	689	700	Right-handed alpha
Helix 25	AC7	A	713	721	Right-handed alpha
Helix 26	AC8	A	729	735	Right-handed alpha
Helix 27	AC9	A	736	740	Right-handed 310
Helix 28	AD1	A	747	761	Right-handed alpha
Helix 29	AD2	A	780	786	Right-handed alpha
Helix 30	AD3	A	797	802	Right-handed alpha
Helix 31	AD4	A	813	852	Right-handed alpha
Helix 32	AD5	A	861	881	Right-handed alpha
Helix 33	AD6	A	886	890	Right-handed 310
Helix 34	AD7	A	903	932	Right-handed alpha
Helix 35	AD8	A	949	968	Right-handed alpha
Helix 36	AD9	A	980	983	Right-handed 310
Helix 37	AE1	A	984	1005	Right-handed alpha
Helix 38	AE2	A	1006	1010	Right-handed 310
Helix 39	AE3	A	1015	1037	Right-handed alpha
Helix 40	AE4	B	336	338	Right-handed 310
Helix 41	AE5	B	339	360	Right-handed alpha

There are 9 sheets in PDB entry 9GSH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	216	first strand
Strand 2	A	263	275	anti-parallel
Strand 3	A	225	237	anti-parallel
Strand 4	A	247	249	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	216	first strand
Strand 2	A	263	275	anti-parallel
Strand 3	A	225	237	anti-parallel
Strand 4	A	257	258	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	434	436	first strand
Strand 2	A	806	808	anti-parallel
Strand 3	A	788	792	parallel
Strand 4	A	770	774	parallel
Strand 5	A	450	454	parallel
Strand 6	A	681	685	parallel
Strand 7	A	742	743	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	474	476	first strand
Strand 2	A	465	471	anti-parallel
Strand 3	A	652	661	anti-parallel
Strand 4	A	625	632	anti-parallel
Strand 5	A	576	581	anti-parallel
Strand 6	A	564	568	anti-parallel
Strand 7	A	553	555	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	474	476	first strand
Strand 2	A	465	471	anti-parallel
Strand 3	A	652	661	anti-parallel
Strand 4	A	590	595	parallel
Strand 5	A	599	602	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	152	first strand
Strand 2	B	165	173	anti-parallel
Strand 3	B	199	204	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	157	first strand
Strand 2	B	231	242	parallel
Strand 3	B	214	221	anti-parallel
Strand 4	B	178	185	anti-parallel
Strand 5	B	188	189	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	157	first strand
Strand 2	B	231	242	parallel
Strand 3	B	254	263	anti-parallel
Strand 4	B	297	301	anti-parallel
Strand 5	B	288	292	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	249	first strand
Strand 2	B	326	333	parallel
Strand 3	B	311	315	anti-parallel
Strand 4	B	270	274	anti-parallel
Strand 5	B	277	280	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GSH

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GSH