Analysis of interatomic Contacts of Structural Units in PDB entry:
9GSI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GSI entry

There is 1 chain in PDB entry 9GSI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 27SER 1042
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 9GSI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 36Right-handed alpha
Helix 2
AA2
A
39 49Right-handed alpha
Helix 3
AA3
A
52 57Right-handed alpha
Helix 4
AA4
A
58 60Right-handed 310
Helix 5
AA5
A
94 103Right-handed alpha
Helix 6
AA6
A
105 123Right-handed alpha
Helix 7
AA7
A
150 183Right-handed alpha
Helix 8
AA8
A
238 243Right-handed alpha
Helix 9
AA9
A
281 288Right-handed alpha
Helix 10
AB1
A
340 376Right-handed alpha
Helix 11
AB2
A
384 386Right-handed 310
Helix 12
AB3
A
387 410Right-handed alpha
Helix 13
AB4
A
413 430Right-handed alpha
Helix 14
AB5
A
440 445Right-handed alpha
Helix 15
AB6
A
446 448Right-handed 310
Helix 16
AB7
A
471 474Right-handed 310
Helix 17
AB8
A
489 501Right-handed alpha
Helix 18
AB9
A
522 535Right-handed alpha
Helix 19
AC1
A
539 546Right-handed alpha
Helix 20
AC2
A
585 590Right-handed alpha
Helix 21
AC3
A
604 622Right-handed alpha
Helix 22
AC4
A
667 678Right-handed alpha
Helix 23
AC5
A
689 701Right-handed alpha
Helix 24
AC6
A
714 722Right-handed alpha
Helix 25
AC7
A
729 737Right-handed alpha
Helix 26
AC8
A
749 760Right-handed alpha
Helix 27
AC9
A
776 778Right-handed 310
Helix 28
AD1
A
779 786Right-handed alpha
Helix 29
AD2
A
797 803Right-handed alpha
Helix 30
AD3
A
813 854Right-handed alpha
Helix 31
AD4
A
861 873Right-handed alpha
Helix 32
AD5
A
873 881Right-handed alpha
Helix 33
AD6
A
886 892Right-handed 310
Helix 34
AD7
A
903 933Right-handed alpha
Helix 35
AD8
A
947 968Right-handed alpha
Helix 36
AD9
A
986 1004Right-handed alpha
Helix 37
AE1
A
1015 1037Right-handed alpha
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There are 6 sheets in PDB entry 9GSI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 216first strand
Strand 2
A
263 271anti-parallel
Strand 3
A
226 237anti-parallel
Strand 4
A
247 250anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 216first strand
Strand 2
A
263 271anti-parallel
Strand 3
A
226 237anti-parallel
Strand 4
A
257 258anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
434 436first strand
Strand 2
A
806 808anti-parallel
Strand 3
A
788 792parallel
Strand 4
A
770 773parallel
Strand 5
A
450 454parallel
Strand 6
A
681 685parallel
Strand 7
A
740 744parallel
Strand 8
A
710 713parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
465 469first strand
Strand 2
A
653 661anti-parallel
Strand 3
A
625 634anti-parallel
Strand 4
A
575 577anti-parallel
Strand 5
A
565 568anti-parallel
Strand 6
A
551 555anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
465 469first strand
Strand 2
A
653 661anti-parallel
Strand 3
A
592 595parallel
Strand 4
A
599 602anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
507 508first strand
Strand 2
A
518 519anti-parallel
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