Analysis of interatomic Contacts of Structural Units in PDB entry:
9GSJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GSJ entry

There are 2 chains in PDB entry 9GSJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 10ASN 581
B
 SER 10ASN 581
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 43 helices in PDB entry 9GSJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 22Right-handed alpha
Helix 2
AA2
A
25 44Right-handed alpha
Helix 3
AA3
A
45 57Right-handed alpha
Helix 4
AA4
A
59 110Right-handed alpha
Helix 5
AA5
A
111 118Right-handed alpha
Helix 6
AA6
A
120 140Right-handed alpha
Helix 7
AA7
A
140 163Right-handed alpha
Helix 8
AA8
A
163 174Right-handed alpha
Helix 9
AA9
A
177 210Right-handed alpha
Helix 10
AB1
A
212 219Right-handed alpha
Helix 11
AB2
A
221 249Right-handed alpha
Helix 12
AB3
A
250 275Right-handed alpha
Helix 13
AB4
A
281 321Right-handed alpha
Helix 14
AB5
A
379 388Right-handed alpha
Helix 15
AB6
A
409 416Right-handed alpha
Helix 16
AB7
A
430 436Right-handed alpha
Helix 17
AB8
A
446 455Right-handed alpha
Helix 18
AB9
A
480 496Right-handed alpha
Helix 19
AC1
A
509 525Right-handed alpha
Helix 20
AC2
A
526 528Right-handed 310
Helix 21
AC3
A
560 568Right-handed alpha
Helix 22
AC4
A
570 581Right-handed alpha
Helix 23
AC5
B
12 21Right-handed alpha
Helix 24
AC6
B
25 57Right-handed alpha
Helix 25
AC7
B
59 110Right-handed alpha
Helix 26
AC8
B
111 119Right-handed alpha
Helix 27
AC9
B
120 140Right-handed alpha
Helix 28
AD1
B
140 163Right-handed alpha
Helix 29
AD2
B
163 174Right-handed alpha
Helix 30
AD3
B
177 210Right-handed alpha
Helix 31
AD4
B
212 220Right-handed alpha
Helix 32
AD5
B
221 249Right-handed alpha
Helix 33
AD6
B
250 276Right-handed alpha
Helix 34
AD7
B
282 323Right-handed alpha
Helix 35
AD8
B
379 388Right-handed alpha
Helix 36
AD9
B
409 416Right-handed alpha
Helix 37
AE1
B
430 437Right-handed alpha
Helix 38
AE2
B
447 455Right-handed alpha
Helix 39
AE3
B
480 496Right-handed alpha
Helix 40
AE4
B
509 526Right-handed alpha
Helix 41
AE5
B
536 542Right-handed alpha
Helix 42
AE6
B
559 571Right-handed alpha
Helix 43
AE7
B
571 581Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 9GSJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 364first strand
Strand 2
A
341 346anti-parallel
Strand 3
A
397 399anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
417 420first strand
Strand 2
A
499 502parallel
Strand 3
A
529 532parallel
Strand 4
A
369 373parallel
Strand 5
A
545 550parallel
Strand 6
A
553 554anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
360 364first strand
Strand 2
B
341 346anti-parallel
Strand 3
B
397 399anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
417 420first strand
Strand 2
B
499 502parallel
Strand 3
B
529 532parallel
Strand 4
B
369 373parallel
Strand 5
B
545 550parallel
Strand 6
B
553 554anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il