Analysis of interatomic Contacts of Structural Units in PDB entry:
9GSM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GSM entry

There are 4 chains in PDB entry 9GSM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 800LYS 898
B
 LEU 800LYS 898
M
 ALA 1ALA 10
N
 ALA 1ALA 8
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 9GSM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
854 858Right-handed 310
Helix 2
AA2
A
870 875Right-handed 310
Helix 3
AA3
B
854 858Right-handed 310
Helix 4
AA4
B
870 875Right-handed 310
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There are 6 sheets in PDB entry 9GSM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
817 821first strand
Strand 2
A
806 811anti-parallel
Strand 3
A
839 843anti-parallel
Strand 4
A
868 869anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
824 825first strand
Strand 2
A
892 897anti-parallel
Strand 3
A
847 852anti-parallel
Strand 4
A
863 865anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
877 878first strand
Strand 2
A
884 885anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
817 821first strand
Strand 2
B
806 811anti-parallel
Strand 3
B
839 843anti-parallel
Strand 4
B
868 869anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
824 825first strand
Strand 2
B
892 897anti-parallel
Strand 3
B
847 852anti-parallel
Strand 4
B
862 865anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
877 878first strand
Strand 2
B
884 885anti-parallel
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