Analysis of interatomic Contacts of Structural Units in PDB entry:
9GSR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GSR entry

There are 2 chains in PDB entry 9GSR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 6HIS 326
B
 THR 10HIS 322
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 33 helices in PDB entry 9GSR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 21Right-handed alpha
Helix 2
AA2
A
29 37Right-handed alpha
Helix 3
AA3
A
54 63Right-handed alpha
Helix 4
AA4
A
64 66Right-handed 310
Helix 5
AA5
A
83 92Right-handed alpha
Helix 6
AA6
A
98 102Right-handed alpha
Helix 7
AA7
A
110 122Right-handed alpha
Helix 8
AA8
A
140 152Right-handed alpha
Helix 9
AA9
A
178 184Right-handed alpha
Helix 10
AB1
A
184 193Right-handed alpha
Helix 11
AB2
A
194 199Right-handed 310
Helix 12
AB3
A
211 215Right-handed alpha
Helix 13
AB4
A
221 223Right-handed 310
Helix 14
AB5
A
224 238Right-handed alpha
Helix 15
AB6
A
256 275Right-handed alpha
Helix 16
AB7
A
308 312Right-handed 310
Helix 17
AB8
B
11 21Right-handed alpha
Helix 18
AB9
B
29 36Right-handed alpha
Helix 19
AC1
B
54 63Right-handed alpha
Helix 20
AC2
B
64 66Right-handed 310
Helix 21
AC3
B
83 92Right-handed alpha
Helix 22
AC4
B
98 102Right-handed alpha
Helix 23
AC5
B
110 119Right-handed alpha
Helix 24
AC6
B
140 152Right-handed alpha
Helix 25
AC7
B
178 184Right-handed alpha
Helix 26
AC8
B
184 193Right-handed alpha
Helix 27
AC9
B
194 199Right-handed 310
Helix 28
AD1
B
211 215Right-handed alpha
Helix 29
AD2
B
221 223Right-handed 310
Helix 30
AD3
B
224 238Right-handed alpha
Helix 31
AD4
B
256 276Right-handed alpha
Helix 32
AD5
B
308 312Right-handed 310
Helix 33
AD6
B
313 320Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 9GSR. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 23first strand
Strand 2
A
242 249parallel
Strand 3
A
157 163parallel
Strand 4
A
207 210anti-parallel
Strand 5
A
126 129anti-parallel
Strand 6
A
42 48parallel
Strand 7
A
72 77parallel
Strand 8
A
94 97parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 23first strand
Strand 2
B
242 249parallel
Strand 3
B
157 163parallel
Strand 4
B
207 210anti-parallel
Strand 5
B
126 129anti-parallel
Strand 6
B
42 48parallel
Strand 7
B
72 77parallel
Strand 8
B
94 97parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il