Analysis of interatomic Contacts of Structural Units in PDB entry:
9GSY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GSY entry

There is 1 chain in PDB entry 9GSY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 25THR 1041
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 35 helices in PDB entry 9GSY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 35Right-handed alpha
Helix 2
AA2
A
39 50Right-handed alpha
Helix 3
AA3
A
54 60Right-handed alpha
Helix 4
AA4
A
72 80Right-handed alpha
Helix 5
AA5
A
95 103Right-handed alpha
Helix 6
AA6
A
105 122Right-handed alpha
Helix 7
AA7
A
151 184Right-handed alpha
Helix 8
AA8
A
204 208Right-handed 310
Helix 9
AA9
A
280 289Right-handed alpha
Helix 10
AB1
A
339 379Right-handed alpha
Helix 11
AB2
A
390 410Right-handed alpha
Helix 12
AB3
A
413 430Right-handed alpha
Helix 13
AB4
A
487 501Right-handed alpha
Helix 14
AB5
A
526 535Right-handed alpha
Helix 15
AB6
A
539 546Right-handed alpha
Helix 16
AB7
A
583 588Right-handed alpha
Helix 17
AB8
A
607 622Right-handed alpha
Helix 18
AB9
A
644 649Right-handed alpha
Helix 19
AC1
A
667 678Right-handed alpha
Helix 20
AC2
A
689 700Right-handed alpha
Helix 21
AC3
A
714 722Right-handed alpha
Helix 22
AC4
A
729 737Right-handed alpha
Helix 23
AC5
A
747 760Right-handed alpha
Helix 24
AC6
A
776 778Right-handed 310
Helix 25
AC7
A
779 786Right-handed alpha
Helix 26
AC8
A
797 803Right-handed alpha
Helix 27
AC9
A
814 854Right-handed alpha
Helix 28
AD1
A
861 870Right-handed alpha
Helix 29
AD2
A
870 881Right-handed alpha
Helix 30
AD3
A
886 892Right-handed 310
Helix 31
AD4
A
903 927Right-handed alpha
Helix 32
AD5
A
927 933Right-handed alpha
Helix 33
AD6
A
947 966Right-handed alpha
Helix 34
AD7
A
984 1004Right-handed alpha
Helix 35
AD8
A
1015 1039Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 9GSY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 203first strand
Strand 2
A
192 195anti-parallel
Strand 3
A
213 216anti-parallel
Strand 4
A
269 273anti-parallel
Strand 5
A
226 231anti-parallel
Strand 6
A
257 258anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 250first strand
Strand 2
A
234 237anti-parallel
Strand 3
A
263 266anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
434 436first strand
Strand 2
A
806 808anti-parallel
Strand 3
A
788 792parallel
Strand 4
A
770 774parallel
Strand 5
A
450 453parallel
Strand 6
A
681 685parallel
Strand 7
A
740 744parallel
Strand 8
A
710 713parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
474 476first strand
Strand 2
A
465 471anti-parallel
Strand 3
A
652 661anti-parallel
Strand 4
A
625 632anti-parallel
Strand 5
A
576 582anti-parallel
Strand 6
A
563 568anti-parallel
Strand 7
A
553 555anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
474 476first strand
Strand 2
A
465 471anti-parallel
Strand 3
A
652 661anti-parallel
Strand 4
A
590 594parallel
Strand 5
A
600 602anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
507 508first strand
Strand 2
A
518 519anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il