Analysis of interatomic Contacts of Structural Units in PDB entry:
9GTJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GTJ entry

There are 2 chains in PDB entry 9GTJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 186
B
 THR 3PRO 186
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 9GTJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
64 75Right-handed alpha
Helix 2
AA2
A
94 100Right-handed alpha
Helix 3
AA3
A
101 110Right-handed alpha
Helix 4
AA4
A
114 121Right-handed alpha
Helix 5
AA5
A
151 153Right-handed 310
Helix 6
AA6
A
154 167Right-handed alpha
Helix 7
AA7
A
168 172Right-handed 310
Helix 8
AA8
B
64 75Right-handed alpha
Helix 9
AA9
B
94 100Right-handed alpha
Helix 10
AB1
B
101 110Right-handed alpha
Helix 11
AB2
B
114 121Right-handed alpha
Helix 12
AB3
B
151 153Right-handed 310
Helix 13
AB4
B
154 167Right-handed alpha
Helix 14
AB5
B
168 172Right-handed 310
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There are 2 sheets in PDB entry 9GTJ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 11first strand
Strand 2
A
34 39anti-parallel
Strand 3
A
16 25anti-parallel
Strand 4
A
174 184anti-parallel
Strand 5
A
85 93anti-parallel
Strand 6
A
144 150anti-parallel
Strand 7
A
127 132anti-parallel
Strand 8
A
49 56anti-parallel
Strand 9
A
5 11anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 11first strand
Strand 2
B
34 39anti-parallel
Strand 3
B
16 25anti-parallel
Strand 4
B
174 184anti-parallel
Strand 5
B
85 93anti-parallel
Strand 6
B
144 150anti-parallel
Strand 7
B
127 132anti-parallel
Strand 8
B
49 56anti-parallel
Strand 9
B
5 11anti-parallel
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