Analysis of interatomic Contacts of Structural Units in PDB entry:
9GTK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GTK entry

There are 6 chains in PDB entry 9GTK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 176
B
 GLY 11TYR 174
C
 MET 1LYS 175
D
 MET 1ASP 173
H
 SER 12TYR 174
I
 ASP 13ASN 172
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 48 helices in PDB entry 9GTK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 26Right-handed alpha
Helix 2
AA2
A
65 75Right-handed alpha
Helix 3
AA3
A
86 92Right-handed alpha
Helix 4
AA4
A
92 105Right-handed alpha
Helix 5
AA5
A
126 138Right-handed alpha
Helix 6
AA6
A
151 174Right-handed alpha
Helix 7
AA7
B
12 24Right-handed alpha
Helix 8
AA8
B
26 36Right-handed alpha
Helix 9
AA9
B
49 57Right-handed alpha
Helix 10
AB1
B
59 69Right-handed alpha
Helix 11
AB2
B
82 91Right-handed alpha
Helix 12
AB3
B
92 102Right-handed alpha
Helix 13
AB4
B
115 124Right-handed alpha
Helix 14
AB5
B
125 135Right-handed alpha
Helix 15
AB6
B
148 156Right-handed alpha
Helix 16
AB7
B
158 174Right-handed alpha
Helix 17
AB8
C
15 26Right-handed alpha
Helix 18
AB9
C
65 75Right-handed alpha
Helix 19
AC1
C
86 92Right-handed alpha
Helix 20
AC2
C
92 105Right-handed alpha
Helix 21
AC3
C
126 138Right-handed alpha
Helix 22
AC4
C
151 174Right-handed alpha
Helix 23
AC5
D
15 26Right-handed alpha
Helix 24
AC6
D
65 75Right-handed alpha
Helix 25
AC7
D
86 92Right-handed alpha
Helix 26
AC8
D
92 105Right-handed alpha
Helix 27
AC9
D
126 138Right-handed alpha
Helix 28
AD1
D
151 173Right-handed alpha
Helix 29
AD2
H
13 24Right-handed alpha
Helix 30
AD3
H
26 36Right-handed alpha
Helix 31
AD4
H
49 57Right-handed alpha
Helix 32
AD5
H
59 69Right-handed alpha
Helix 33
AD6
H
82 91Right-handed alpha
Helix 34
AD7
H
92 102Right-handed alpha
Helix 35
AD8
H
115 124Right-handed alpha
Helix 36
AD9
H
125 135Right-handed alpha
Helix 37
AE1
H
148 156Right-handed alpha
Helix 38
AE2
H
158 172Right-handed alpha
Helix 39
AE3
I
14 24Right-handed alpha
Helix 40
AE4
I
26 36Right-handed alpha
Helix 41
AE5
I
49 57Right-handed alpha
Helix 42
AE6
I
59 69Right-handed alpha
Helix 43
AE7
I
82 91Right-handed alpha
Helix 44
AE8
I
92 102Right-handed alpha
Helix 45
AE9
I
115 124Right-handed alpha
Helix 46
AF1
I
125 135Right-handed alpha
Helix 47
AF2
I
148 156Right-handed alpha
Helix 48
AF3
I
158 171Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 9GTK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 46first strand
Strand 2
A
49 57anti-parallel
Strand 3
A
2 9parallel
Strand 4
A
77 83parallel
Strand 5
A
111 116parallel
Strand 6
A
141 143parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
38 46first strand
Strand 2
C
49 57anti-parallel
Strand 3
C
2 9parallel
Strand 4
C
77 83parallel
Strand 5
C
111 116parallel
Strand 6
C
141 143parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
38 46first strand
Strand 2
D
49 57anti-parallel
Strand 3
D
2 10parallel
Strand 4
D
77 83parallel
Strand 5
D
111 116parallel
Strand 6
D
141 143parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il