Analysis of interatomic Contacts of Structural Units in PDB entry:
9GTU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GTU entry

There are 3 chains in PDB entry 9GTU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 ARG 2367VAL 2820
B
 ASP 586CYS 1019
A
 GLY 584GLU 608
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 9GTU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
2375 2384Right-handed alpha
Helix 2
AA2
C
2414 2432Right-handed alpha
Helix 3
AA3
C
2459 2463Right-handed 310
Helix 4
AA4
C
2465 2476Right-handed alpha
Helix 5
AA5
C
2486 2497Right-handed alpha
Helix 6
AA6
C
2523 2537Right-handed alpha
Helix 7
AA7
C
2548 2555Right-handed alpha
Helix 8
AA8
C
2573 2584Right-handed alpha
Helix 9
AA9
C
2631 2648Right-handed alpha
Helix 10
AB1
C
2688 2692Right-handed 310
Helix 11
AB2
C
2694 2705Right-handed alpha
Helix 12
AB3
C
2714 2726Right-handed alpha
Helix 13
AB4
C
2748 2765Right-handed alpha
Helix 14
AB5
C
2782 2787Right-handed 310
Helix 15
AB6
C
2790 2794Right-handed alpha
Helix 16
AB7
C
2800 2805Right-handed 310
Helix 17
AB8
C
2806 2820Right-handed alpha
Helix 18
AB9
B
590 602Right-handed alpha
Helix 19
AC1
B
846 863Right-handed alpha
Helix 20
AC2
B
897 908Right-handed alpha
Helix 21
AC3
B
916 928Right-handed alpha
Helix 22
AC4
B
956 967Right-handed alpha
Helix 23
AC5
B
981 989Right-handed alpha
Helix 24
AC6
B
1001 1006Right-handed 310
Helix 25
AC7
B
1007 1019Right-handed alpha
Helix 26
AC8
A
593 604Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 9GTU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2454 2456first strand
Strand 2
C
2444 2450anti-parallel
Strand 3
C
2401 2408parallel
Strand 4
C
2509 2516parallel
Strand 5
C
2538 2544parallel
Strand 6
C
2564 2567parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2684 2687first strand
Strand 2
C
2663 2668anti-parallel
Strand 3
C
2619 2623parallel
Strand 4
C
2737 2741parallel
Strand 5
C
2767 2774parallel
Strand 6
C
2795 2798parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
889 895first strand
Strand 2
B
875 882anti-parallel
Strand 3
B
832 839parallel
Strand 4
B
941 947parallel
Strand 5
B
972 976parallel
Strand 6
B
996 999parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il