Analysis of interatomic Contacts of Structural Units in PDB entry:
9GU5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GU5 entry

There are 13 chains in PDB entry 9GU5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 4SER 69
B
 LYS 3HIS 70
C
 GLN 5SER 69
D
 GLY 4PRO 67
E
 GLN 5SER 69
F
 GLN 5SER 69
G
 LYS 3VAL 68
H
 GLY 4PRO 67
I
 SER 6VAL 68
J
 SER 6ASN 73
K
 SER 6SER 69
L
 GLY 4HIS 71
M
 A 1 A 4
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 9GU5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 18Right-handed alpha
Helix 2
AA2
B
7 18Right-handed alpha
Helix 3
AA3
C
7 18Right-handed alpha
Helix 4
AA4
D
7 18Right-handed alpha
Helix 5
AA5
E
8 18Right-handed alpha
Helix 6
AA6
F
7 16Right-handed alpha
Helix 7
AA7
G
7 18Right-handed alpha
Helix 8
AA8
G
57 59Right-handed 310
Helix 9
AA9
H
8 18Right-handed alpha
Helix 10
AB1
I
7 18Right-handed alpha
Helix 11
AB2
J
7 18Right-handed alpha
Helix 12
AB3
K
7 18Right-handed alpha
Helix 13
AB4
L
7 18Right-handed alpha
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There are 7 sheets in PDB entry 9GU5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
31 32first strand
Strand 2
C
24 26anti-parallel
Strand 3
C
59 62anti-parallel
Strand 4
A
52 55anti-parallel
Strand 5
A
43 47anti-parallel
Strand 6
A
31 36anti-parallel
Strand 7
A
22 26anti-parallel
Strand 8
A
59 64anti-parallel
Strand 9
D
53 55anti-parallel
Strand 10
D
43 46anti-parallel
Strand 11
D
36 39anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 26first strand
Strand 2
B
59 64anti-parallel
Strand 3
C
53 55anti-parallel
Strand 4
C
43 47anti-parallel
Strand 5
C
35 39anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 39first strand
Strand 2
B
43 47anti-parallel
Strand 3
B
51 55anti-parallel
Strand 4
F
59 64anti-parallel
Strand 5
F
22 26anti-parallel
Strand 6
F
31 34anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
31 34first strand
Strand 2
D
22 26anti-parallel
Strand 3
D
59 62anti-parallel
Strand 4
E
52 55anti-parallel
Strand 5
E
43 46anti-parallel
Strand 6
E
36 39anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
31 34first strand
Strand 2
E
22 26anti-parallel
Strand 3
E
59 64anti-parallel
Strand 4
F
51 55anti-parallel
Strand 5
F
43 47anti-parallel
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There are 27 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
22 25first strand
Strand 2
G
31 36anti-parallel
Strand 3
G
43 47anti-parallel
Strand 4
G
52 55anti-parallel
Strand 5
I
59 64anti-parallel
Strand 6
I
22 26anti-parallel
Strand 7
I
31 39anti-parallel
Strand 8
I
43 47anti-parallel
Strand 9
I
52 55anti-parallel
Strand 10
H
59 64anti-parallel
Strand 11
H
22 26anti-parallel
Strand 12
H
31 39anti-parallel
Strand 13
H
43 47anti-parallel
Strand 14
H
53 55anti-parallel
Strand 15
L
59 64anti-parallel
Strand 16
L
22 26anti-parallel
Strand 17
L
30 39anti-parallel
Strand 18
L
43 47anti-parallel
Strand 19
L
51 55anti-parallel
Strand 20
K
59 64anti-parallel
Strand 21
K
22 26anti-parallel
Strand 22
K
31 40anti-parallel
Strand 23
K
43 47anti-parallel
Strand 24
K
51 55anti-parallel
Strand 25
J
59 64anti-parallel
Strand 26
J
22 26anti-parallel
Strand 27
J
31 32anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
61 62first strand
Strand 2
J
51 55anti-parallel
Strand 3
J
43 47anti-parallel
Strand 4
J
36 39anti-parallel
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