Analysis of interatomic Contacts of Structural Units in PDB entry:
9GUC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GUC entry

There are 2 chains in PDB entry 9GUC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 124SER 391
B
 SER 5VAL 86
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 9GUC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
129 131Right-handed 310
Helix 2
AA2
A
166 171Right-handed alpha
Helix 3
AA3
A
174 188Right-handed alpha
Helix 4
AA4
A
217 226Right-handed alpha
Helix 5
AA5
A
229 250Right-handed alpha
Helix 6
AA6
A
258 260Right-handed 310
Helix 7
AA7
A
294 296Right-handed 310
Helix 8
AA8
A
297 302Right-handed alpha
Helix 9
AA9
A
309 325Right-handed alpha
Helix 10
AB1
A
333 343Right-handed alpha
Helix 11
AB2
A
353 364Right-handed alpha
Helix 12
AB3
A
367 371Right-handed 310
Helix 13
AB4
A
373 379Right-handed alpha
Helix 14
AB5
A
380 387Right-handed alpha
Helix 15
AB6
B
6 24Right-handed alpha
Helix 16
AB7
B
73 76Right-handed 310
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There are 3 sheets in PDB entry 9GUC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 141first strand
Strand 2
A
146 152anti-parallel
Strand 3
A
158 165anti-parallel
Strand 4
A
205 210anti-parallel
Strand 5
A
196 201anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 264first strand
Strand 2
A
270 272anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 292first strand
Strand 2
B
28 42parallel
Strand 3
B
45 58anti-parallel
Strand 4
B
61 72anti-parallel
Strand 5
B
77 85anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il