Analysis of interatomic Contacts of Structural Units in PDB entry:
9GUV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GUV entry

There are 38 chains in PDB entry 9GUV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	A 1	G 515
A	G 517	C 526
A	C 528	U 965
A	A 968	G 1206
A	C 1208	G 1401
A	C 1403	U 1406
A	A 1408	G 1497
A	A 1499	G 1515
A	G 1517	G 1517
A	C 1520	U 1541
B	MET 1	ASN 352
C	ALA 2	GLN 227
D	GLY 2	ALA 212
E	ALA 2	LYS 206
F	GLU 10	LEU 165
G	MET 1	LYS 104
H	PRO 2	HIS 153
I	SER 2	ALA 130
J	GLU 3	ARG 130
K	ASN 3	GLY 103
L	ARG 13	VAL 129
M	ALA 2	LYS 88
M	LEU 90	LYS 123
N	ALA 2	ILE 116
O	ALA 2	TRP 101
P	SER 2	ARG 89
Q	MET 1	ALA 82
R	LYS 4	VAL 83
S	LYS 9	GLN 75
T	PRO 2	ALA 84
U	ALA 2	ALA 87
V	PRO 2	TYR 71
W	C 1	G 7
W	G 9	G 20
W	A 22	G 32
W	U 34	G 54
W	C 57	A 77
X	A 4	U 20

There are 98 helices in PDB entry 9GUV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	4	16	Right-handed alpha
Helix 2	AA2	B	51	53	Right-handed 310
Helix 3	AA3	B	86	104	Right-handed alpha
Helix 4	AA4	B	177	193	Right-handed alpha
Helix 5	AA5	B	265	274	Right-handed alpha
Helix 6	AA6	B	307	309	Right-handed 310
Helix 7	AA7	B	317	322	Right-handed alpha
Helix 8	AA8	C	5	13	Right-handed alpha
Helix 9	AA9	C	21	23	Right-handed 310
Helix 10	AB1	C	24	29	Right-handed 310
Helix 11	AB2	C	42	63	Right-handed alpha
Helix 12	AB3	C	76	87	Right-handed alpha
Helix 13	AB4	C	103	124	Right-handed alpha
Helix 14	AB5	C	130	149	Right-handed alpha
Helix 15	AB6	C	169	180	Right-handed alpha
Helix 16	AB7	C	206	227	Right-handed alpha
Helix 17	AB8	D	6	11	Right-handed alpha
Helix 18	AB9	D	25	47	Right-handed alpha
Helix 19	AC1	D	72	78	Right-handed alpha
Helix 20	AC2	D	81	96	Right-handed alpha
Helix 21	AC3	D	108	111	Right-handed 310
Helix 22	AC4	D	112	126	Right-handed alpha
Helix 23	AC5	D	129	145	Right-handed alpha
Helix 24	AC6	D	156	160	Right-handed 310
Helix 25	AC7	E	8	16	Right-handed alpha
Helix 26	AC8	E	27	32	Right-handed alpha
Helix 27	AC9	E	49	66	Right-handed alpha
Helix 28	AD1	E	68	82	Right-handed alpha
Helix 29	AD2	E	85	97	Right-handed alpha
Helix 30	AD3	E	97	106	Right-handed alpha
Helix 31	AD4	E	110	120	Right-handed alpha
Helix 32	AD5	E	147	150	Right-handed 310
Helix 33	AD6	E	152	163	Right-handed alpha
Helix 34	AD7	E	196	206	Right-handed alpha
Helix 35	AD8	F	55	69	Right-handed alpha
Helix 36	AD9	F	109	119	Right-handed alpha
Helix 37	AE1	F	132	146	Right-handed alpha
Helix 38	AE2	F	149	158	Right-handed alpha
Helix 39	AE3	F	160	165	Right-handed alpha
Helix 40	AE4	G	12	15	Right-handed 310
Helix 41	AE5	G	16	32	Right-handed alpha
Helix 42	AE6	G	67	81	Right-handed alpha
Helix 43	AE7	H	20	31	Right-handed alpha
Helix 44	AE8	H	35	55	Right-handed alpha
Helix 45	AE9	H	57	70	Right-handed alpha
Helix 46	AF1	H	92	110	Right-handed alpha
Helix 47	AF2	H	115	129	Right-handed alpha
Helix 48	AF3	H	132	148	Right-handed alpha
Helix 49	AF4	H	149	152	Right-handed 310
Helix 50	AF5	I	5	20	Right-handed alpha
Helix 51	AF6	I	30	43	Right-handed alpha
Helix 52	AF7	I	88	92	Right-handed 310
Helix 53	AF8	I	94	99	Right-handed 310
Helix 54	AF9	I	112	120	Right-handed alpha
Helix 55	AG1	J	35	39	Right-handed alpha
Helix 56	AG2	J	41	56	Right-handed alpha
Helix 57	AG3	J	71	91	Right-handed alpha
Helix 58	AG4	J	94	101	Right-handed alpha
Helix 59	AG5	K	14	32	Right-handed alpha
Helix 60	AG6	K	80	88	Right-handed alpha
Helix 61	AG7	L	59	74	Right-handed alpha
Helix 62	AG8	L	75	78	Right-handed 310
Helix 63	AG9	L	94	104	Right-handed alpha
Helix 64	AH1	M	3	10	Right-handed alpha
Helix 65	AH2	M	21	25	Right-handed 310
Helix 66	AH3	M	114	118	Right-handed 310
Helix 67	AH4	N	14	20	Right-handed alpha
Helix 68	AH5	N	26	37	Right-handed alpha
Helix 69	AH6	N	44	48	Right-handed 310
Helix 70	AH7	N	49	62	Right-handed alpha
Helix 71	AH8	N	65	84	Right-handed alpha
Helix 72	AH9	N	85	94	Right-handed alpha
Helix 73	AI1	N	106	111	Right-handed alpha
Helix 74	AI2	O	3	20	Right-handed alpha
Helix 75	AI3	O	20	32	Right-handed alpha
Helix 76	AI4	O	37	51	Right-handed alpha
Helix 77	AI5	O	52	60	Right-handed 310
Helix 78	AI6	O	81	90	Right-handed alpha
Helix 79	AI7	P	4	16	Right-handed alpha
Helix 80	AI8	P	24	46	Right-handed alpha
Helix 81	AI9	P	49	74	Right-handed alpha
Helix 82	AJ1	P	74	85	Right-handed alpha
Helix 83	AJ2	Q	53	63	Right-handed alpha
Helix 84	AJ3	Q	68	82	Right-handed alpha
Helix 85	AJ4	R	49	52	Right-handed 310
Helix 86	AJ5	S	27	32	Right-handed alpha
Helix 87	AJ6	S	41	46	Right-handed alpha
Helix 88	AJ7	S	48	65	Right-handed alpha
Helix 89	AJ8	T	12	26	Right-handed alpha
Helix 90	AJ9	T	41	45	Right-handed 310
Helix 91	AK1	T	63	67	Right-handed 310
Helix 92	AK2	T	70	75	Right-handed 310
Helix 93	AK3	U	4	42	Right-handed alpha
Helix 94	AK4	U	44	64	Right-handed alpha
Helix 95	AK5	U	68	85	Right-handed alpha
Helix 96	AK6	V	11	27	Right-handed alpha
Helix 97	AK7	V	27	35	Right-handed alpha
Helix 98	AK8	V	40	66	Right-handed alpha

There are 27 sheets in PDB entry 9GUV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	49	first strand
Strand 2	B	35	39	anti-parallel
Strand 3	B	23	31	anti-parallel
Strand 4	B	67	74	anti-parallel
Strand 5	B	83	85	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	111	first strand
Strand 2	B	151	160	anti-parallel
Strand 3	B	165	167	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	116	first strand
Strand 2	B	119	123	anti-parallel
Strand 3	B	128	131	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	215	216	first strand
Strand 2	B	207	210	anti-parallel
Strand 3	B	195	202	anti-parallel
Strand 4	B	240	245	anti-parallel
Strand 5	B	257	258	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	279	287	first strand
Strand 2	B	291	297	anti-parallel
Strand 3	B	300	305	anti-parallel
Strand 4	B	341	345	parallel
Strand 5	B	327	336	anti-parallel
Strand 6	B	279	287	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	19	first strand
Strand 2	C	38	41	anti-parallel
Strand 3	C	31	34	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	92	first strand
Strand 2	C	67	70	parallel
Strand 3	C	160	163	parallel
Strand 4	C	183	187	parallel
Strand 5	C	198	201	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	58	first strand
Strand 2	D	64	70	anti-parallel
Strand 3	D	99	105	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	165	171	first strand
Strand 2	D	148	154	anti-parallel
Strand 3	D	194	206	anti-parallel
Strand 4	D	180	191	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	128	129	first strand
Strand 2	E	123	125	anti-parallel
Strand 3	E	141	145	anti-parallel
Strand 4	E	179	182	anti-parallel
Strand 5	E	171	174	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	12	22	first strand
Strand 2	F	31	40	anti-parallel
Strand 3	F	45	53	anti-parallel
Strand 4	F	72	73	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	85	89	first strand
Strand 2	F	92	98	anti-parallel
Strand 3	F	123	129	anti-parallel
Strand 4	F	105	106	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	35	45	first strand
Strand 2	G	57	66	anti-parallel
Strand 3	G	2	10	anti-parallel
Strand 4	G	84	92	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	73	77	first strand
Strand 2	H	86	90	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	24	28	first strand
Strand 2	I	58	63	anti-parallel
Strand 3	I	46	52	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	74	77	first strand
Strand 2	I	123	130	anti-parallel
Strand 3	I	86	87	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	74	77	first strand
Strand 2	I	123	130	anti-parallel
Strand 3	I	101	106	anti-parallel
Strand 4	I	109	111	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	6	12	first strand
Strand 2	J	15	23	anti-parallel
Strand 3	J	61	68	anti-parallel
Strand 4	J	28	30	parallel
Strand 5	J	33	34	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	35	52	first strand
Strand 2	K	62	77	anti-parallel
Strand 3	K	6	12	anti-parallel
Strand 4	K	96	102	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	35	52	first strand
Strand 2	K	62	77	anti-parallel
Strand 3	O	97	98	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	41	46	first strand
Strand 2	L	30	36	anti-parallel
Strand 3	L	18	25	anti-parallel
Strand 4	L	81	87	parallel
Strand 5	L	106	112	parallel
Strand 6	V	3	5	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	29	40	first strand
Strand 2	M	50	57	anti-parallel
Strand 3	M	62	66	anti-parallel
Strand 4	M	95	97	parallel
Strand 5	M	79	84	anti-parallel
Strand 6	M	29	40	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	4	first strand
Strand 2	N	7	8	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	73	74	first strand
Strand 2	O	79	80	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	50	52	first strand
Strand 2	Q	34	39	anti-parallel
Strand 3	Q	14	23	anti-parallel
Strand 4	Q	2	11	anti-parallel
Strand 5	Q	66	67	parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	7	14	first strand
Strand 2	R	20	30	anti-parallel
Strand 3	R	37	47	anti-parallel
Strand 4	R	73	79	parallel
Strand 5	R	58	63	anti-parallel
Strand 6	R	7	14	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	31	33	first strand
Strand 2	T	47	52	parallel
Strand 3	T	57	62	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GUV

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GUV