Analysis of interatomic Contacts of Structural Units in PDB entry:
9GV3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GV3 entry

There are 4 chains in PDB entry 9GV3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	SER 364
B	SER 2	ASP 359
C	SER 2	ASP 361
D	SER 2	THR 211

There are 80 helices in PDB entry 9GV3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	16	Right-handed 310
Helix 2	AA2	A	22	34	Right-handed alpha
Helix 3	AA3	A	46	56	Right-handed alpha
Helix 4	AA4	A	62	75	Right-handed alpha
Helix 5	AA5	A	78	81	Right-handed 310
Helix 6	AA6	A	89	94	Right-handed alpha
Helix 7	AA7	A	102	110	Right-handed alpha
Helix 8	AA8	A	140	151	Right-handed alpha
Helix 9	AA9	A	170	191	Right-handed alpha
Helix 10	AB1	A	208	231	Right-handed alpha
Helix 11	AB2	A	233	237	Right-handed 310
Helix 12	AB3	A	255	271	Right-handed alpha
Helix 13	AB4	A	286	298	Right-handed alpha
Helix 14	AB5	A	313	325	Right-handed alpha
Helix 15	AB6	A	327	329	Right-handed 310
Helix 16	AB7	A	330	350	Right-handed alpha
Helix 17	AB8	A	354	364	Right-handed alpha
Helix 18	AB9	B	10	16	Right-handed 310
Helix 19	AC1	B	22	34	Right-handed alpha
Helix 20	AC2	B	46	56	Right-handed alpha
Helix 21	AC3	B	62	75	Right-handed alpha
Helix 22	AC4	B	78	81	Right-handed 310
Helix 23	AC5	B	89	94	Right-handed alpha
Helix 24	AC6	B	102	110	Right-handed alpha
Helix 25	AC7	B	140	151	Right-handed alpha
Helix 26	AC8	B	170	191	Right-handed alpha
Helix 27	AC9	B	208	231	Right-handed alpha
Helix 28	AD1	B	233	237	Right-handed 310
Helix 29	AD2	B	255	271	Right-handed alpha
Helix 30	AD3	B	286	298	Right-handed alpha
Helix 31	AD4	B	313	325	Right-handed alpha
Helix 32	AD5	B	327	329	Right-handed 310
Helix 33	AD6	B	330	350	Right-handed alpha
Helix 34	AD7	B	354	359	Right-handed alpha
Helix 35	AD8	C	10	16	Right-handed 310
Helix 36	AD9	C	22	34	Right-handed alpha
Helix 37	AE1	C	46	56	Right-handed alpha
Helix 38	AE2	C	62	75	Right-handed alpha
Helix 39	AE3	C	78	81	Right-handed 310
Helix 40	AE4	C	89	94	Right-handed alpha
Helix 41	AE5	C	102	110	Right-handed alpha
Helix 42	AE6	C	140	151	Right-handed alpha
Helix 43	AE7	C	170	191	Right-handed alpha
Helix 44	AE8	C	208	231	Right-handed alpha
Helix 45	AE9	C	233	237	Right-handed 310
Helix 46	AF1	C	255	271	Right-handed alpha
Helix 47	AF2	C	286	298	Right-handed alpha
Helix 48	AF3	C	313	325	Right-handed alpha
Helix 49	AF4	C	327	329	Right-handed 310
Helix 50	AF5	C	330	350	Right-handed alpha
Helix 51	AF6	C	354	359	Right-handed alpha
Helix 52	AF7	D	10	16	Right-handed 310
Helix 53	AF8	D	22	34	Right-handed alpha
Helix 54	AF9	D	46	54	Right-handed alpha
Helix 55	AG1	D	62	75	Right-handed alpha
Helix 56	AG2	D	78	81	Right-handed 310
Helix 57	AG3	D	89	94	Right-handed alpha
Helix 58	AG4	D	102	110	Right-handed alpha
Helix 59	AG5	D	140	151	Right-handed alpha
Helix 60	AG6	D	170	191	Right-handed alpha
Helix 61	AG7	D	208	231	Right-handed alpha
Helix 62	AG8	D	233	237	Right-handed 310
Helix 63	AG9	D	255	271	Right-handed alpha
Helix 64	AH1	D	286	298	Right-handed alpha
Helix 65	AH2	D	313	325	Right-handed alpha
Helix 66	AH3	D	327	329	Right-handed 310
Helix 67	AH4	D	330	350	Right-handed alpha
Helix 68	AH5	D	354	359	Right-handed alpha
Helix 69	AH6	E	28	32	Right-handed 310
Helix 70	AH7	E	66	69	Right-handed 310
Helix 71	AH8	E	91	95	Right-handed 310
Helix 72	AH9	F	28	32	Right-handed 310
Helix 73	AI1	F	66	69	Right-handed 310
Helix 74	AI2	F	91	95	Right-handed 310
Helix 75	AI3	G	28	32	Right-handed 310
Helix 76	AI4	G	66	69	Right-handed 310
Helix 77	AI5	G	91	95	Right-handed 310
Helix 78	AI6	H	28	32	Right-handed 310
Helix 79	AI7	H	66	69	Right-handed 310
Helix 80	AI8	H	91	95	Right-handed 310

There are 26 sheets in PDB entry 9GV3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	8	first strand
Strand 2	D	4	8	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	43	first strand
Strand 2	A	83	88	parallel
Strand 3	A	113	117	parallel
Strand 4	A	155	162	parallel
Strand 5	A	194	201	parallel
Strand 6	A	238	239	parallel
Strand 7	A	277	280	parallel
Strand 8	A	307	312	parallel
Strand 9	A	39	43	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	124	first strand
Strand 2	A	133	135	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	8	first strand
Strand 2	C	4	8	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	43	first strand
Strand 2	B	83	88	parallel
Strand 3	B	113	117	parallel
Strand 4	B	155	162	parallel
Strand 5	B	194	201	parallel
Strand 6	B	238	239	parallel
Strand 7	B	277	280	parallel
Strand 8	B	307	312	parallel
Strand 9	B	39	43	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	124	first strand
Strand 2	B	133	135	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	43	first strand
Strand 2	C	83	88	parallel
Strand 3	C	113	117	parallel
Strand 4	C	155	162	parallel
Strand 5	C	194	201	parallel
Strand 6	C	238	239	parallel
Strand 7	C	277	280	parallel
Strand 8	C	307	312	parallel
Strand 9	C	39	43	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	124	first strand
Strand 2	C	133	135	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	43	first strand
Strand 2	D	83	88	parallel
Strand 3	D	113	117	parallel
Strand 4	D	155	162	parallel
Strand 5	D	194	201	parallel
Strand 6	D	238	239	parallel
Strand 7	D	277	280	parallel
Strand 8	D	307	312	parallel
Strand 9	D	39	43	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	122	124	first strand
Strand 2	D	133	135	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	7	first strand
Strand 2	E	18	23	anti-parallel
Strand 3	E	82	87	anti-parallel
Strand 4	E	72	77	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	131	135	parallel
Strand 3	E	96	103	anti-parallel
Strand 4	E	34	39	anti-parallel
Strand 5	E	46	51	anti-parallel
Strand 6	E	62	64	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	131	135	parallel
Strand 3	E	96	103	anti-parallel
Strand 4	E	124	125	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	108	109	first strand
Strand 2	E	114	115	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	7	first strand
Strand 2	F	18	23	anti-parallel
Strand 3	F	82	87	anti-parallel
Strand 4	F	72	77	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	131	135	parallel
Strand 3	F	96	103	anti-parallel
Strand 4	F	34	39	anti-parallel
Strand 5	F	46	51	anti-parallel
Strand 6	F	62	64	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	131	135	parallel
Strand 3	F	96	103	anti-parallel
Strand 4	F	124	125	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	108	109	first strand
Strand 2	F	114	115	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5	7	first strand
Strand 2	G	18	23	anti-parallel
Strand 3	G	82	87	anti-parallel
Strand 4	G	72	77	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	131	135	parallel
Strand 3	G	96	103	anti-parallel
Strand 4	G	34	39	anti-parallel
Strand 5	G	46	51	anti-parallel
Strand 6	G	62	64	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	131	135	parallel
Strand 3	G	96	103	anti-parallel
Strand 4	G	124	125	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	108	109	first strand
Strand 2	G	114	115	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	7	first strand
Strand 2	H	18	23	anti-parallel
Strand 3	H	82	87	anti-parallel
Strand 4	H	72	77	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	131	135	parallel
Strand 3	H	96	103	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	46	51	anti-parallel
Strand 6	H	62	64	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	131	135	parallel
Strand 3	H	96	103	anti-parallel
Strand 4	H	124	125	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	108	109	first strand
Strand 2	H	114	115	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GV3

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GV3