Analysis of interatomic Contacts of Structural Units in PDB entry:
9GV8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GV8 entry

There is 1 chain in PDB entry 9GV8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1MET 478
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 9GV8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
67 72Right-handed alpha
Helix 2
AA2
A
75 80Right-handed alpha
Helix 3
AA3
A
107 111Right-handed 310
Helix 4
AA4
A
113 117Right-handed 310
Helix 5
AA5
A
121 133Right-handed alpha
Helix 6
AA6
A
144 152Right-handed alpha
Helix 7
AA7
A
160 177Right-handed alpha
Helix 8
AA8
A
188 193Right-handed alpha
Helix 9
AA9
A
195 204Right-handed alpha
Helix 10
AB1
A
205 207Right-handed 310
Helix 11
AB2
A
223 239Right-handed alpha
Helix 12
AB3
A
251 256Right-handed 310
Helix 13
AB4
A
257 269Right-handed alpha
Helix 14
AB5
A
314 322Right-handed alpha
Helix 15
AB6
A
325 334Right-handed alpha
Helix 16
AB7
A
344 354Right-handed alpha
Helix 17
AB8
A
372 384Right-handed alpha
Helix 18
AB9
A
393 400Right-handed alpha
Helix 19
AC1
A
402 409Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 9GV8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 36first strand
Strand 2
A
21 28anti-parallel
Strand 3
A
3 12anti-parallel
Strand 4
A
43 48parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 36first strand
Strand 2
A
21 28anti-parallel
Strand 3
A
3 12anti-parallel
Strand 4
A
53 56parallel
Strand 5
A
425 428anti-parallel
Strand 6
A
449 454anti-parallel
Strand 7
A
457 461anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 60first strand
Strand 2
A
83 88parallel
Strand 3
A
137 140parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 143first strand
Strand 2
A
181 185parallel
Strand 3
A
212 216parallel
Strand 4
A
242 244parallel
Strand 5
A
274 278parallel
Strand 6
A
357 359parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 287first strand
Strand 2
A
336 340anti-parallel
Strand 3
A
299 304anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il