Analysis of interatomic Contacts of Structural Units in PDB entry:
9GV9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GV9 entry

There are 2 chains in PDB entry 9GV9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLU 8	GLU 374
A	GLU 8	LYS 270

There are 18 helices in PDB entry 9GV9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	25	29	Right-handed 310
Helix 2	AA2	B	41	43	Right-handed 310
Helix 3	AA3	B	64	68	Right-handed 310
Helix 4	AA4	B	90	95	Right-handed 310
Helix 5	AA5	B	99	109	Right-handed alpha
Helix 6	AA6	B	110	115	Right-handed 310
Helix 7	AA7	B	168	176	Right-handed alpha
Helix 8	AA8	B	283	285	Right-handed 310
Helix 9	AA9	B	304	307	Right-handed 310
Helix 10	AB1	A	25	29	Right-handed 310
Helix 11	AB2	A	41	43	Right-handed 310
Helix 12	AB3	A	64	68	Right-handed 310
Helix 13	AB4	A	90	95	Right-handed alpha
Helix 14	AB5	A	100	109	Right-handed alpha
Helix 15	AB6	A	110	115	Right-handed 310
Helix 16	AB7	A	168	176	Right-handed alpha
Helix 17	AB8	A	283	285	Right-handed 310
Helix 18	AB9	A	304	307	Right-handed 310

There are 10 sheets in PDB entry 9GV9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	45	53	anti-parallel
Strand 3	B	56	63	anti-parallel
Strand 4	B	364	373	anti-parallel
Strand 5	B	125	132	anti-parallel
Strand 6	B	290	298	anti-parallel
Strand 7	B	313	322	anti-parallel
Strand 8	B	327	338	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	38	first strand
Strand 2	B	78	85	anti-parallel
Strand 3	B	349	356	anti-parallel
Strand 4	B	143	149	anti-parallel
Strand 5	B	227	232	anti-parallel
Strand 6	B	235	243	anti-parallel
Strand 7	B	272	281	anti-parallel
Strand 8	B	267	268	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	71	first strand
Strand 2	B	78	85	anti-parallel
Strand 3	B	349	356	anti-parallel
Strand 4	B	143	149	anti-parallel
Strand 5	B	227	232	anti-parallel
Strand 6	B	235	243	anti-parallel
Strand 7	B	341	342	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	166	first strand
Strand 2	B	156	158	anti-parallel
Strand 3	B	209	219	anti-parallel
Strand 4	B	185	191	anti-parallel
Strand 5	B	179	182	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	301	302	first strand
Strand 2	B	309	311	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	45	53	anti-parallel
Strand 3	A	56	63	anti-parallel
Strand 4	A	364	373	anti-parallel
Strand 5	A	125	132	anti-parallel
Strand 6	A	290	298	anti-parallel
Strand 7	A	313	322	anti-parallel
Strand 8	A	327	338	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	38	first strand
Strand 2	A	78	85	anti-parallel
Strand 3	A	349	356	anti-parallel
Strand 4	A	143	149	anti-parallel
Strand 5	A	227	232	anti-parallel
Strand 6	A	235	243	anti-parallel
Strand 7	A	272	281	anti-parallel
Strand 8	A	267	268	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	71	first strand
Strand 2	A	78	85	anti-parallel
Strand 3	A	349	356	anti-parallel
Strand 4	A	143	149	anti-parallel
Strand 5	A	227	232	anti-parallel
Strand 6	A	235	243	anti-parallel
Strand 7	A	341	342	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	166	first strand
Strand 2	A	156	158	anti-parallel
Strand 3	A	209	219	anti-parallel
Strand 4	A	185	191	anti-parallel
Strand 5	A	179	182	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	302	first strand
Strand 2	A	309	311	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GV9

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GV9