Analysis of interatomic Contacts of Structural Units in PDB entry:
9GVB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GVB entry

There are 3 chains in PDB entry 9GVB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 2GLY 200
B
 ASP 27GLN 68
C
 ASP 27ILE 71
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 8 helices in PDB entry 9GVB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 39Right-handed alpha
Helix 2
AA2
A
84 87Right-handed 310
Helix 3
AA3
A
156 169Right-handed alpha
Helix 4
AA4
A
180 186Right-handed alpha
Helix 5
AA5
B
39 54Right-handed alpha
Helix 6
AA6
B
60 67Right-handed alpha
Helix 7
AA7
C
39 54Right-handed alpha
Helix 8
AA8
C
60 68Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 9GVB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 27first strand
Strand 2
A
42 50anti-parallel
Strand 3
A
115 123anti-parallel
Strand 4
A
70 71anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 27first strand
Strand 2
A
42 50anti-parallel
Strand 3
A
115 123anti-parallel
Strand 4
A
81 82anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 32first strand
Strand 2
A
193 197parallel
Strand 3
A
133 139anti-parallel
Strand 4
A
58 65anti-parallel
Strand 5
A
100 106anti-parallel
Strand 6
A
91 96anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 32first strand
Strand 2
A
193 197parallel
Strand 3
A
133 139anti-parallel
Strand 4
A
58 65anti-parallel
Strand 5
A
149 151anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 143first strand
Strand 2
A
146 147anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il