Analysis of interatomic Contacts of Structural Units in PDB entry:
9GVD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GVD entry

There are 2 chains in PDB entry 9GVD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3PRO 56
A
 GLY 58HIS 514
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 9GVD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 26Right-handed alpha
Helix 2
AA2
A
34 44Right-handed alpha
Helix 3
AA3
A
56 67Right-handed alpha
Helix 4
AA4
A
69 74Right-handed alpha
Helix 5
AA5
A
88 96Right-handed alpha
Helix 6
AA6
A
111 115Right-handed 310
Helix 7
AA7
A
119 124Right-handed 310
Helix 8
AA8
A
139 141Right-handed 310
Helix 9
AA9
A
142 152Right-handed alpha
Helix 10
AB1
A
159 165Right-handed 310
Helix 11
AB2
A
183 186Right-handed 310
Helix 12
AB3
A
187 204Right-handed alpha
Helix 13
AB4
A
226 230Right-handed 310
Helix 14
AB5
A
232 236Right-handed 310
Helix 15
AB6
A
244 250Right-handed alpha
Helix 16
AB7
A
252 262Right-handed alpha
Helix 17
AB8
A
263 267Right-handed 310
Helix 18
AB9
A
274 278Right-handed 310
Helix 19
AC1
A
279 311Right-handed alpha
Helix 20
AC2
A
313 315Right-handed 310
Helix 21
AC3
A
330 334Right-handed 310
Helix 22
AC4
A
341 346Right-handed alpha
Helix 23
AC5
A
372 381Right-handed alpha
Helix 24
AC6
A
394 399Right-handed alpha
Helix 25
AC7
A
424 429Right-handed alpha
Helix 26
AC8
A
431 434Right-handed 310
Helix 27
AC9
A
473 475Right-handed 310
Helix 28
AD1
A
476 494Right-handed alpha
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There are 4 sheets in PDB entry 9GVD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 137first strand
Strand 2
A
100 104parallel
Strand 3
A
209 213parallel
Strand 4
A
5 11parallel
Strand 5
A
317 323parallel
Strand 6
A
349 352anti-parallel
Strand 7
A
45 47anti-parallel
Strand 8
A
363 364parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
368 369parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
410 415first strand
Strand 2
A
436 441anti-parallel
Strand 3
A
445 450anti-parallel
Strand 4
A
456 459anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
502 503first strand
Strand 2
A
510 511anti-parallel
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