Analysis of interatomic Contacts of Structural Units in PDB entry:
9GVK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GVK entry

There are 4 chains in PDB entry 9GVK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	TYR 2	TYR 398
E	PRO 4	GLN 414
D	LYS 3	SER 228
F	LYS 3	SER 228

There are 45 helices in PDB entry 9GVK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	4	14	Right-handed alpha
Helix 2	AA2	C	20	28	Right-handed alpha
Helix 3	AA3	C	28	61	Right-handed alpha
Helix 4	AA4	C	81	85	Right-handed 310
Helix 5	AA5	C	125	129	Right-handed 310
Helix 6	AA6	C	147	155	Right-handed alpha
Helix 7	AA7	C	194	199	Right-handed 310
Helix 8	AA8	C	230	235	Right-handed 310
Helix 9	AA9	C	250	252	Right-handed 310
Helix 10	AB1	C	253	293	Right-handed alpha
Helix 11	AB2	C	293	304	Right-handed alpha
Helix 12	AB3	C	306	339	Right-handed alpha
Helix 13	AB4	C	360	365	Right-handed alpha
Helix 14	AB5	C	366	390	Right-handed alpha
Helix 15	AB6	C	391	396	Right-handed alpha
Helix 16	AB7	E	5	15	Right-handed alpha
Helix 17	AB8	E	24	59	Right-handed alpha
Helix 18	AB9	E	153	155	Right-handed 310
Helix 19	AC1	E	230	232	Right-handed 310
Helix 20	AC2	E	233	242	Right-handed alpha
Helix 21	AC3	E	253	258	Right-handed alpha
Helix 22	AC4	E	258	298	Right-handed alpha
Helix 23	AC5	E	298	309	Right-handed alpha
Helix 24	AC6	E	311	344	Right-handed alpha
Helix 25	AC7	E	378	395	Right-handed alpha
Helix 26	AC8	E	396	404	Right-handed alpha
Helix 27	AC9	E	406	412	Right-handed alpha
Helix 28	AD1	D	47	56	Right-handed alpha
Helix 29	AD2	D	77	88	Right-handed alpha
Helix 30	AD3	D	103	115	Right-handed alpha
Helix 31	AD4	D	121	133	Right-handed alpha
Helix 32	AD5	D	135	139	Right-handed 310
Helix 33	AD6	D	142	146	Right-handed 310
Helix 34	AD7	D	147	161	Right-handed alpha
Helix 35	AD8	D	177	196	Right-handed alpha
Helix 36	AD9	D	205	211	Right-handed alpha
Helix 37	AE1	F	47	56	Right-handed alpha
Helix 38	AE2	F	77	88	Right-handed alpha
Helix 39	AE3	F	103	115	Right-handed alpha
Helix 40	AE4	F	118	133	Right-handed alpha
Helix 41	AE5	F	135	139	Right-handed 310
Helix 42	AE6	F	142	146	Right-handed 310
Helix 43	AE7	F	147	161	Right-handed alpha
Helix 44	AE8	F	177	196	Right-handed alpha
Helix 45	AE9	F	207	212	Right-handed 310

There are 12 sheets in PDB entry 9GVK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	68	first strand
Strand 2	C	246	248	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	96	first strand
Strand 2	C	221	226	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	109	113	first strand
Strand 2	C	100	104	anti-parallel
Strand 3	C	160	170	anti-parallel
Strand 4	C	179	186	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	93	94	first strand
Strand 2	E	226	227	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	167	168	first strand
Strand 2	E	98	105	anti-parallel
Strand 3	E	111	118	anti-parallel
Strand 4	E	203	207	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	150	151	first strand
Strand 2	E	192	193	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	33	first strand
Strand 2	D	4	11	anti-parallel
Strand 3	D	65	68	anti-parallel
Strand 4	D	71	72	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	16	first strand
Strand 2	D	21	23	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	89	92	first strand
Strand 2	D	166	170	parallel
Strand 3	D	198	202	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	31	32	first strand
Strand 2	F	6	9	anti-parallel
Strand 3	F	65	68	anti-parallel
Strand 4	F	71	72	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	14	16	first strand
Strand 2	F	21	23	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	90	92	first strand
Strand 2	F	166	170	parallel
Strand 3	F	198	202	parallel
Strand 4	F	38	41	parallel
Strand 5	F	214	219	parallel
Strand 6	F	222	224	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GVK

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GVK