Analysis of interatomic Contacts of Structural Units in PDB entry:
9GVO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GVO entry

There are 3 chains in PDB entry 9GVO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3PHE 254
B
 SER 8LEU 157
H
 GLU 3PHE 258
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 9GVO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 34Right-handed 310
Helix 2
AA2
A
89 93Right-handed 310
Helix 3
AA3
A
223 227Right-handed 310
Helix 4
AA4
B
9 22Right-handed alpha
Helix 5
AA5
B
25 33Right-handed 310
Helix 6
AA6
B
39 43Right-handed 310
Helix 7
AA7
B
52 68Right-handed alpha
Helix 8
AA8
B
69 76Right-handed alpha
Helix 9
AA9
B
77 98Right-handed alpha
Helix 10
AB1
B
109 133Right-handed alpha
Helix 11
AB2
B
136 155Right-handed alpha
Helix 12
AB3
H
30 34Right-handed 310
Helix 13
AB4
H
76 78Right-handed 310
Helix 14
AB5
H
89 93Right-handed 310
Helix 15
AB6
H
175 178Right-handed 310
Helix 16
AB7
H
226 230Right-handed 310
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There are 12 sheets in PDB entry 9GVO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 9first strand
Strand 2
A
20 27anti-parallel
Strand 3
A
80 85anti-parallel
Strand 4
A
70 75anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 14first strand
Strand 2
A
118 122parallel
Strand 3
A
94 101anti-parallel
Strand 4
A
36 41anti-parallel
Strand 5
A
48 53anti-parallel
Strand 6
A
60 62anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 14first strand
Strand 2
A
118 122parallel
Strand 3
A
94 101anti-parallel
Strand 4
A
111 114anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 151first strand
Strand 2
A
163 169anti-parallel
Strand 3
A
214 219anti-parallel
Strand 4
A
206 211anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 156first strand
Strand 2
A
246 249parallel
Strand 3
A
229 234anti-parallel
Strand 4
A
177 182anti-parallel
Strand 5
A
189 193anti-parallel
Strand 6
A
197 198anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 156first strand
Strand 2
A
246 249parallel
Strand 3
A
229 234anti-parallel
Strand 4
A
241 242anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
5 9first strand
Strand 2
H
20 27anti-parallel
Strand 3
H
80 85anti-parallel
Strand 4
H
70 75anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
13 14first strand
Strand 2
H
120 124parallel
Strand 3
H
94 101anti-parallel
Strand 4
H
36 41anti-parallel
Strand 5
H
47 53anti-parallel
Strand 6
H
60 62anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
13 14first strand
Strand 2
H
120 124parallel
Strand 3
H
94 101anti-parallel
Strand 4
H
113 116anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
150 153first strand
Strand 2
H
165 171anti-parallel
Strand 3
H
217 222anti-parallel
Strand 4
H
209 214anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
156 159first strand
Strand 2
H
250 254parallel
Strand 3
H
232 237anti-parallel
Strand 4
H
180 185anti-parallel
Strand 5
H
192 196anti-parallel
Strand 6
H
200 201anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
156 159first strand
Strand 2
H
250 254parallel
Strand 3
H
232 237anti-parallel
Strand 4
H
245 246anti-parallel
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