Analysis of interatomic Contacts of Structural Units in PDB entry:
9GW2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GW2 entry

There are 12 chains in PDB entry 9GW2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
N
 T 2 C 126
O
 ASP 1452SER 1696
T
 G 57 A 181
a
 GLY 34GLU 134
b
 ASP 24GLY 101
c
 ARG 12PRO 118
d
 SER 32SER 123
e
 HIS 40GLU 134
f
 ASP 24GLY 101
g
 LYS 16PRO 118
h
 GLU 35SER 123
j
 GLY 937SER 951
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 9GW2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
O
1452 1455Right-handed 310
Helix 2
AA2
O
1456 1466Right-handed alpha
Helix 3
AA3
O
1488 1491Right-handed 310
Helix 4
AA4
O
1492 1497Right-handed alpha
Helix 5
AA5
O
1505 1512Right-handed alpha
Helix 6
AA6
O
1522 1526Right-handed 310
Helix 7
AA7
O
1535 1539Right-handed 310
Helix 8
AA8
O
1585 1599Right-handed alpha
Helix 9
AA9
O
1622 1627Right-handed 310
Helix 10
AB1
a
45 58Right-handed alpha
Helix 11
AB2
a
64 77Right-handed alpha
Helix 12
AB3
a
86 115Right-handed alpha
Helix 13
AB4
a
121 133Right-handed alpha
Helix 14
AB5
b
24 29Right-handed 310
Helix 15
AB6
b
30 41Right-handed alpha
Helix 16
AB7
b
49 76Right-handed alpha
Helix 17
AB8
b
82 94Right-handed alpha
Helix 18
AB9
c
17 23Right-handed alpha
Helix 19
AC1
c
28 37Right-handed alpha
Helix 20
AC2
c
47 74Right-handed alpha
Helix 21
AC3
c
80 91Right-handed alpha
Helix 22
AC4
c
91 98Right-handed alpha
Helix 23
AC5
d
37 49Right-handed alpha
Helix 24
AC6
d
55 84Right-handed alpha
Helix 25
AC7
d
90 102Right-handed alpha
Helix 26
AC8
d
104 123Right-handed alpha
Helix 27
AC9
e
45 58Right-handed alpha
Helix 28
AD1
e
64 78Right-handed alpha
Helix 29
AD2
e
86 115Right-handed alpha
Helix 30
AD3
e
121 133Right-handed alpha
Helix 31
AD4
f
25 29Right-handed 310
Helix 32
AD5
f
30 41Right-handed alpha
Helix 33
AD6
f
49 76Right-handed alpha
Helix 34
AD7
f
82 93Right-handed alpha
Helix 35
AD8
g
17 23Right-handed alpha
Helix 36
AD9
g
28 38Right-handed alpha
Helix 37
AE1
g
46 74Right-handed alpha
Helix 38
AE2
g
80 90Right-handed alpha
Helix 39
AE3
g
91 98Right-handed alpha
Helix 40
AE4
h
37 49Right-handed alpha
Helix 41
AE5
h
55 84Right-handed alpha
Helix 42
AE6
h
90 102Right-handed alpha
Helix 43
AE7
h
103 123Right-handed alpha
Helix 44
AE8
j
940 945Right-handed alpha
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There are 16 sheets in PDB entry 9GW2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
1474 1475first strand
Strand 2
O
1620 1621parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
1480 1481first strand
Strand 2
O
1582 1584parallel
Strand 3
O
1613 1616anti-parallel
Strand 4
O
1606 1610anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
1552 1556first strand
Strand 2
O
1562 1566anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
1575 1578first strand
Strand 2
O
1645 1652anti-parallel
Strand 3
O
1635 1642anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
1628 1629first strand
Strand 2
O
1663 1664parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
1669 1670first strand
Strand 2
a
35 36anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
84 85first strand
Strand 2
b
80 81parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
119 120first strand
Strand 2
b
45 46parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
96 98first strand
Strand 2
g
101 103parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
c
43 44first strand
Strand 2
d
88 89parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
c
78 79first strand
Strand 2
d
53 54parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
c
102 103first strand
Strand 2
f
97 98parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
e
84 85first strand
Strand 2
f
80 81parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
e
119 120first strand
Strand 2
f
45 46parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
g
43 44first strand
Strand 2
h
88 89parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
g
78 79first strand
Strand 2
h
53 54parallel
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