Analysis of interatomic Contacts of Structural Units in PDB entry:
9GW5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GW5 entry

There are 4 chains in PDB entry 9GW5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 9LEU 157
H
 VAL 4GLY 542
U
 GLN 3PRO 251
V
 GLN 3GLU 244
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 9GW5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 22Right-handed alpha
Helix 2
AA2
A
25 33Right-handed 310
Helix 3
AA3
A
39 44Right-handed 310
Helix 4
AA4
A
45 49Right-handed 310
Helix 5
AA5
A
52 68Right-handed alpha
Helix 6
AA6
A
69 76Right-handed alpha
Helix 7
AA7
A
77 101Right-handed alpha
Helix 8
AA8
A
112 133Right-handed alpha
Helix 9
AA9
A
136 155Right-handed alpha
Helix 10
AB1
H
30 34Right-handed 310
Helix 11
AB2
H
89 93Right-handed 310
Helix 12
AB3
H
513 517Right-handed 310
Helix 13
AB4
U
30 34Right-handed 310
Helix 14
AB5
U
64 67Right-handed 310
Helix 15
AB6
U
89 92Right-handed 310
Helix 16
AB7
U
221 225Right-handed 310
Helix 17
AB8
V
30 33Right-handed 310
Helix 18
AB9
V
64 67Right-handed 310
Helix 19
AC1
V
89 93Right-handed 310
Helix 20
AC2
V
102 106Right-handed 310
Helix 21
AC3
V
168 170Right-handed 310
Helix 22
AC4
V
218 222Right-handed 310
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There are 14 sheets in PDB entry 9GW5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
5 9first strand
Strand 2
H
20 27anti-parallel
Strand 3
H
80 85anti-parallel
Strand 4
H
70 75anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
60 62first strand
Strand 2
H
48 53anti-parallel
Strand 3
H
36 41anti-parallel
Strand 4
H
94 101anti-parallel
Strand 5
H
111 114anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
60 62first strand
Strand 2
H
48 53anti-parallel
Strand 3
H
36 41anti-parallel
Strand 4
H
94 101anti-parallel
Strand 5
H
118 120anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
438 441first strand
Strand 2
H
453 459anti-parallel
Strand 3
H
504 509anti-parallel
Strand 4
H
496 501anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
444 447first strand
Strand 2
H
536 540parallel
Strand 3
H
519 524anti-parallel
Strand 4
H
467 472anti-parallel
Strand 5
H
479 483anti-parallel
Strand 6
H
487 488anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
444 447first strand
Strand 2
H
536 540parallel
Strand 3
H
519 524anti-parallel
Strand 4
H
531 532anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
5 8first strand
Strand 2
U
20 27anti-parallel
Strand 3
U
80 85anti-parallel
Strand 4
U
70 75anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
12 14first strand
Strand 2
U
116 120parallel
Strand 3
U
94 100anti-parallel
Strand 4
U
36 42anti-parallel
Strand 5
U
47 53anti-parallel
Strand 6
U
60 62anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
146 149first strand
Strand 2
U
161 167anti-parallel
Strand 3
U
212 217anti-parallel
Strand 4
U
204 209anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
152 155first strand
Strand 2
U
244 248parallel
Strand 3
U
227 232anti-parallel
Strand 4
U
175 180anti-parallel
Strand 5
U
186 191anti-parallel
Strand 6
U
195 196anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
V
5 8first strand
Strand 2
V
20 27anti-parallel
Strand 3
V
80 85anti-parallel
Strand 4
V
70 75anti-parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
V
12 14first strand
Strand 2
V
112 116parallel
Strand 3
V
94 100anti-parallel
Strand 4
V
35 41anti-parallel
Strand 5
V
47 54anti-parallel
Strand 6
V
60 62anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
V
143 145first strand
Strand 2
V
157 167anti-parallel
Strand 3
V
204 214anti-parallel
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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
V
148 150first strand
Strand 2
V
241 244parallel
Strand 3
V
224 229anti-parallel
Strand 4
V
172 177anti-parallel
Strand 5
V
183 188anti-parallel
Strand 6
V
192 193anti-parallel
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