Analysis of interatomic Contacts of Structural Units in PDB entry:
9GW9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GW9 entry

There are 3 chains in PDB entry 9GW9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 327	LEU 736
B	ASP 327	LEU 736
C	SER 371	ILE 457

There are 16 helices in PDB entry 9GW9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	327	334	Right-handed alpha
Helix 2	AA2	A	478	489	Right-handed alpha
Helix 3	AA3	A	525	532	Right-handed alpha
Helix 4	AA4	A	533	538	Right-handed alpha
Helix 5	AA5	A	552	562	Right-handed alpha
Helix 6	AA6	A	580	588	Right-handed alpha
Helix 7	AA7	A	627	635	Right-handed alpha
Helix 8	AA8	A	639	648	Right-handed alpha
Helix 9	AA9	B	328	335	Right-handed alpha
Helix 10	AB1	B	480	488	Right-handed alpha
Helix 11	AB2	B	529	538	Right-handed alpha
Helix 12	AB3	B	550	565	Right-handed alpha
Helix 13	AB4	B	576	579	Right-handed 310
Helix 14	AB5	B	580	586	Right-handed alpha
Helix 15	AB6	B	627	638	Right-handed alpha
Helix 16	AB7	B	639	648	Right-handed alpha

There are 11 sheets in PDB entry 9GW9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	345	first strand
Strand 2	A	493	496	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	388	389	first strand
Strand 2	A	407	408	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	541	547	first strand
Strand 2	A	501	506	parallel
Strand 3	A	567	571	parallel
Strand 4	A	617	624	parallel
Strand 5	A	606	614	anti-parallel
Strand 6	A	593	598	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	510	511	first strand
Strand 2	A	522	523	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	656	661	first strand
Strand 2	A	688	691	parallel
Strand 3	A	673	679	anti-parallel
Strand 4	A	709	711	anti-parallel
Strand 5	A	725	731	anti-parallel
Strand 6	A	656	661	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	665	666	first strand
Strand 2	A	721	722	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	346	first strand
Strand 2	B	492	496	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	541	546	first strand
Strand 2	B	501	505	parallel
Strand 3	B	567	571	parallel
Strand 4	B	618	624	parallel
Strand 5	B	608	613	anti-parallel
Strand 6	B	593	596	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	510	511	first strand
Strand 2	B	522	523	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	656	661	first strand
Strand 2	B	688	691	parallel
Strand 3	B	673	678	anti-parallel
Strand 4	B	708	711	anti-parallel
Strand 5	B	727	732	anti-parallel
Strand 6	B	656	661	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	388	391	first strand
Strand 2	C	407	411	parallel
Strand 3	C	375	378	anti-parallel
Strand 4	C	423	425	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GW9

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GW9