Analysis of interatomic Contacts of Structural Units in PDB entry:
9GWP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GWP entry

There are 2 chains in PDB entry 9GWP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 234ASP 503
B
 GLU 235ASP 503
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 9GWP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
235 254Right-handed alpha
Helix 2
AA2
A
257 266Right-handed alpha
Helix 3
AA3
A
279 290Right-handed alpha
Helix 4
AA4
A
305 330Right-handed alpha
Helix 5
AA5
A
338 359Right-handed alpha
Helix 6
AA6
A
370 372Right-handed 310
Helix 7
AA7
A
378 383Right-handed alpha
Helix 8
AA8
A
387 391Right-handed 310
Helix 9
AA9
A
392 404Right-handed alpha
Helix 10
AB1
A
408 421Right-handed alpha
Helix 11
AB2
A
430 453Right-handed alpha
Helix 12
AB3
A
458 466Right-handed alpha
Helix 13
AB4
A
466 488Right-handed alpha
Helix 14
AB5
A
494 501Right-handed alpha
Helix 15
AB6
B
236 254Right-handed alpha
Helix 16
AB7
B
257 267Right-handed alpha
Helix 17
AB8
B
279 287Right-handed alpha
Helix 18
AB9
B
305 330Right-handed alpha
Helix 19
AC1
B
333 337Right-handed 310
Helix 20
AC2
B
338 360Right-handed alpha
Helix 21
AC3
B
378 383Right-handed alpha
Helix 22
AC4
B
392 404Right-handed alpha
Helix 23
AC5
B
408 421Right-handed alpha
Helix 24
AC6
B
430 453Right-handed alpha
Helix 25
AC7
B
458 488Right-handed alpha
Helix 26
AC8
B
494 502Right-handed alpha
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There are 2 sheets in PDB entry 9GWP. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 277first strand
Strand 2
A
374 377parallel
Strand 3
A
366 369anti-parallel
Strand 4
A
362 363anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
275 277first strand
Strand 2
B
374 377parallel
Strand 3
B
366 369anti-parallel
Strand 4
B
362 363anti-parallel
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