Analysis of interatomic Contacts of Structural Units in PDB entry:
9GWV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GWV entry

There are 2 chains in PDB entry 9GWV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0GLN 260
B
 SER -2GLN 260
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 9GWV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 13Right-handed 310
Helix 2
AA2
A
24 37Right-handed alpha
Helix 3
AA3
A
47 59Right-handed alpha
Helix 4
AA4
A
71 87Right-handed alpha
Helix 5
AA5
A
103 107Right-handed 310
Helix 6
AA6
A
108 120Right-handed alpha
Helix 7
AA7
A
120 138Right-handed alpha
Helix 8
AA8
A
147 152Right-handed alpha
Helix 9
AA9
A
157 180Right-handed alpha
Helix 10
AB1
A
206 220Right-handed alpha
Helix 11
AB2
A
228 240Right-handed alpha
Helix 12
AB3
A
241 244Right-handed 310
Helix 13
AB4
B
9 13Right-handed 310
Helix 14
AB5
B
24 37Right-handed alpha
Helix 15
AB6
B
47 59Right-handed alpha
Helix 16
AB7
B
71 86Right-handed alpha
Helix 17
AB8
B
103 107Right-handed 310
Helix 18
AB9
B
108 120Right-handed alpha
Helix 19
AC1
B
120 138Right-handed alpha
Helix 20
AC2
B
157 180Right-handed alpha
Helix 21
AC3
B
208 220Right-handed alpha
Helix 22
AC4
B
228 240Right-handed alpha
Helix 23
AC5
B
241 244Right-handed 310
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There are 4 sheets in PDB entry 9GWV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 66first strand
Strand 2
A
40 45parallel
Strand 3
A
16 20parallel
Strand 4
A
91 94parallel
Strand 5
A
140 145parallel
Strand 6
A
183 190parallel
Strand 7
A
250 253parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 194first strand
Strand 2
A
226 227parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 66first strand
Strand 2
B
40 45parallel
Strand 3
B
16 20parallel
Strand 4
B
91 94parallel
Strand 5
B
140 145parallel
Strand 6
B
183 190parallel
Strand 7
B
250 253parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 194first strand
Strand 2
B
226 227parallel
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