Analysis of interatomic Contacts of Structural Units in PDB entry:
9GX8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GX8 entry

There are 2 chains in PDB entry 9GX8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 28THR 251
B
 PHE 28THR 251
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 9GX8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
84 98Right-handed alpha
Helix 2
AA2
A
112 117Right-handed alpha
Helix 3
AA3
A
118 125Right-handed alpha
Helix 4
AA4
A
133 142Right-handed alpha
Helix 5
AA5
A
192 194Right-handed 310
Helix 6
AA6
A
211 223Right-handed alpha
Helix 7
AA7
A
239 249Right-handed alpha
Helix 8
AA8
B
84 98Right-handed alpha
Helix 9
AA9
B
112 117Right-handed alpha
Helix 10
AB1
B
118 125Right-handed alpha
Helix 11
AB2
B
133 142Right-handed alpha
Helix 12
AB3
B
192 194Right-handed 310
Helix 13
AB4
B
211 223Right-handed alpha
Helix 14
AB5
B
239 249Right-handed alpha
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There are 6 sheets in PDB entry 9GX8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 35first strand
Strand 2
A
40 43anti-parallel
Strand 3
A
48 56anti-parallel
Strand 4
A
62 72anti-parallel
Strand 5
A
75 79anti-parallel
Strand 6
A
102 107parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 132first strand
Strand 2
A
149 151parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 159first strand
Strand 2
A
162 167anti-parallel
Strand 3
A
179 182anti-parallel
Strand 4
A
187 191anti-parallel
Strand 5
A
228 231parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 35first strand
Strand 2
B
40 43anti-parallel
Strand 3
B
48 56anti-parallel
Strand 4
B
62 72anti-parallel
Strand 5
B
75 79anti-parallel
Strand 6
B
102 107parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 132first strand
Strand 2
B
149 151parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
154 159first strand
Strand 2
B
162 167anti-parallel
Strand 3
B
179 182anti-parallel
Strand 4
B
187 191anti-parallel
Strand 5
B
228 231parallel
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