Analysis of interatomic Contacts of Structural Units in PDB entry:
9GX9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GX9 entry

There is 1 chain in PDB entry 9GX9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 7LYS 233
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 9GX9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
67 81Right-handed alpha
Helix 2
AA2
A
95 100Right-handed alpha
Helix 3
AA3
A
101 108Right-handed alpha
Helix 4
AA4
A
116 125Right-handed alpha
Helix 5
AA5
A
175 177Right-handed 310
Helix 6
AA6
A
191 206Right-handed alpha
Helix 7
AA7
A
222 232Right-handed alpha
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There are 3 sheets in PDB entry 9GX9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 18first strand
Strand 2
A
22 28anti-parallel
Strand 3
A
31 39anti-parallel
Strand 4
A
45 55anti-parallel
Strand 5
A
58 62anti-parallel
Strand 6
A
85 90parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 115first strand
Strand 2
A
132 134parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 142first strand
Strand 2
A
145 150anti-parallel
Strand 3
A
162 165anti-parallel
Strand 4
A
170 174anti-parallel
Strand 5
A
211 214parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il