Analysis of interatomic Contacts of Structural Units in PDB entry:
9GXL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GXL entry

There are 2 chains in PDB entry 9GXL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 4	LEU 940
B	ASP 4	LEU 940

There are 70 helices in PDB entry 9GXL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	45	Right-handed alpha
Helix 2	AA2	A	46	57	Right-handed alpha
Helix 3	AA3	A	60	68	Right-handed alpha
Helix 4	AA4	A	99	104	Right-handed alpha
Helix 5	AA5	A	106	118	Right-handed alpha
Helix 6	AA6	A	263	268	Right-handed 310
Helix 7	AA7	A	419	422	Right-handed 310
Helix 8	AA8	A	430	436	Right-handed alpha
Helix 9	AA9	A	437	447	Right-handed alpha
Helix 10	AB1	A	451	458	Right-handed alpha
Helix 11	AB2	A	459	476	Right-handed alpha
Helix 12	AB3	A	490	506	Right-handed alpha
Helix 13	AB4	A	522	524	Right-handed 310
Helix 14	AB5	A	525	538	Right-handed alpha
Helix 15	AB6	A	549	555	Right-handed alpha
Helix 16	AB7	A	566	570	Right-handed 310
Helix 17	AB8	A	578	585	Right-handed alpha
Helix 18	AB9	A	588	595	Right-handed alpha
Helix 19	AC1	A	646	653	Right-handed alpha
Helix 20	AC2	A	654	664	Right-handed alpha
Helix 21	AC3	A	678	682	Right-handed 310
Helix 22	AC4	A	700	705	Right-handed alpha
Helix 23	AC5	A	706	717	Right-handed alpha
Helix 24	AC6	A	718	725	Right-handed alpha
Helix 25	AC7	A	772	777	Right-handed alpha
Helix 26	AC8	A	784	791	Right-handed alpha
Helix 27	AC9	A	792	800	Right-handed alpha
Helix 28	AD1	A	803	816	Right-handed alpha
Helix 29	AD2	A	826	830	Right-handed 310
Helix 30	AD3	A	831	846	Right-handed alpha
Helix 31	AD4	A	864	881	Right-handed alpha
Helix 32	AD5	A	891	897	Right-handed alpha
Helix 33	AD6	A	908	912	Right-handed 310
Helix 34	AD7	A	920	925	Right-handed alpha
Helix 35	AD8	A	930	940	Right-handed alpha
Helix 36	AD9	B	38	45	Right-handed alpha
Helix 37	AE1	B	46	57	Right-handed alpha
Helix 38	AE2	B	60	68	Right-handed alpha
Helix 39	AE3	B	99	104	Right-handed alpha
Helix 40	AE4	B	106	118	Right-handed alpha
Helix 41	AE5	B	263	268	Right-handed 310
Helix 42	AE6	B	419	422	Right-handed 310
Helix 43	AE7	B	430	436	Right-handed alpha
Helix 44	AE8	B	437	447	Right-handed alpha
Helix 45	AE9	B	451	458	Right-handed alpha
Helix 46	AF1	B	459	476	Right-handed alpha
Helix 47	AF2	B	490	506	Right-handed alpha
Helix 48	AF3	B	522	524	Right-handed 310
Helix 49	AF4	B	525	538	Right-handed alpha
Helix 50	AF5	B	549	555	Right-handed alpha
Helix 51	AF6	B	566	570	Right-handed 310
Helix 52	AF7	B	578	585	Right-handed alpha
Helix 53	AF8	B	588	595	Right-handed alpha
Helix 54	AF9	B	646	653	Right-handed alpha
Helix 55	AG1	B	654	664	Right-handed alpha
Helix 56	AG2	B	678	682	Right-handed 310
Helix 57	AG3	B	700	705	Right-handed alpha
Helix 58	AG4	B	706	717	Right-handed alpha
Helix 59	AG5	B	718	725	Right-handed alpha
Helix 60	AG6	B	772	777	Right-handed alpha
Helix 61	AG7	B	784	791	Right-handed alpha
Helix 62	AG8	B	792	800	Right-handed alpha
Helix 63	AG9	B	803	816	Right-handed alpha
Helix 64	AH1	B	826	830	Right-handed 310
Helix 65	AH2	B	831	846	Right-handed alpha
Helix 66	AH3	B	864	881	Right-handed alpha
Helix 67	AH4	B	891	897	Right-handed alpha
Helix 68	AH5	B	908	912	Right-handed 310
Helix 69	AH6	B	920	925	Right-handed alpha
Helix 70	AH7	B	930	940	Right-handed alpha

There are 16 sheets in PDB entry 9GXL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	24	first strand
Strand 2	A	5	11	anti-parallel
Strand 3	A	77	79	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	87	first strand
Strand 2	A	511	515	parallel
Strand 3	A	542	546	parallel
Strand 4	A	28	32	parallel
Strand 5	A	558	563	parallel
Strand 6	A	572	577	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	251	252	first strand
Strand 2	A	257	258	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	285	first strand
Strand 2	A	406	407	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	424	425	first strand
Strand 2	A	428	429	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	627	632	first strand
Strand 2	A	613	619	anti-parallel
Strand 3	A	675	677	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	684	688	first strand
Strand 2	A	852	857	parallel
Strand 3	A	884	888	parallel
Strand 4	A	636	641	parallel
Strand 5	A	900	905	parallel
Strand 6	A	914	919	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	748	751	first strand
Strand 2	A	759	762	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	24	first strand
Strand 2	B	5	11	anti-parallel
Strand 3	B	77	79	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	87	first strand
Strand 2	B	511	515	parallel
Strand 3	B	542	546	parallel
Strand 4	B	28	32	parallel
Strand 5	B	558	563	parallel
Strand 6	B	572	577	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	251	252	first strand
Strand 2	B	257	258	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	285	first strand
Strand 2	B	406	407	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	424	425	first strand
Strand 2	B	428	429	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	627	632	first strand
Strand 2	B	613	619	anti-parallel
Strand 3	B	675	677	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	684	688	first strand
Strand 2	B	852	857	parallel
Strand 3	B	884	888	parallel
Strand 4	B	636	641	parallel
Strand 5	B	900	905	parallel
Strand 6	B	914	919	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	748	751	first strand
Strand 2	B	759	762	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GXL

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GXL