Analysis of interatomic Contacts of Structural Units in PDB entry:
9GXM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GXM entry

There are 4 chains in PDB entry 9GXM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 3	LEU 940
B	LYS 3	LEU 940
C	C 1	G 33
D	C 1	G 33

There are 69 helices in PDB entry 9GXM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	45	Right-handed alpha
Helix 2	AA2	A	46	57	Right-handed alpha
Helix 3	AA3	A	99	104	Right-handed alpha
Helix 4	AA4	A	106	118	Right-handed alpha
Helix 5	AA5	A	263	268	Right-handed 310
Helix 6	AA6	A	419	423	Right-handed 310
Helix 7	AA7	A	429	436	Right-handed alpha
Helix 8	AA8	A	437	447	Right-handed alpha
Helix 9	AA9	A	451	458	Right-handed alpha
Helix 10	AB1	A	458	476	Right-handed alpha
Helix 11	AB2	A	490	506	Right-handed alpha
Helix 12	AB3	A	522	524	Right-handed 310
Helix 13	AB4	A	525	539	Right-handed alpha
Helix 14	AB5	A	549	554	Right-handed alpha
Helix 15	AB6	A	566	570	Right-handed 310
Helix 16	AB7	A	578	585	Right-handed alpha
Helix 17	AB8	A	588	595	Right-handed alpha
Helix 18	AB9	A	646	653	Right-handed alpha
Helix 19	AC1	A	654	664	Right-handed alpha
Helix 20	AC2	A	678	682	Right-handed 310
Helix 21	AC3	A	700	705	Right-handed alpha
Helix 22	AC4	A	706	717	Right-handed alpha
Helix 23	AC5	A	718	725	Right-handed alpha
Helix 24	AC6	A	772	778	Right-handed alpha
Helix 25	AC7	A	784	790	Right-handed alpha
Helix 26	AC8	A	792	800	Right-handed alpha
Helix 27	AC9	A	803	816	Right-handed alpha
Helix 28	AD1	A	826	830	Right-handed 310
Helix 29	AD2	A	831	846	Right-handed alpha
Helix 30	AD3	A	864	881	Right-handed alpha
Helix 31	AD4	A	891	896	Right-handed alpha
Helix 32	AD5	A	908	912	Right-handed 310
Helix 33	AD6	A	920	925	Right-handed alpha
Helix 34	AD7	A	930	940	Right-handed alpha
Helix 35	AD8	B	38	45	Right-handed alpha
Helix 36	AD9	B	46	57	Right-handed alpha
Helix 37	AE1	B	99	104	Right-handed alpha
Helix 38	AE2	B	106	118	Right-handed alpha
Helix 39	AE3	B	263	268	Right-handed 310
Helix 40	AE4	B	419	423	Right-handed 310
Helix 41	AE5	B	429	436	Right-handed alpha
Helix 42	AE6	B	437	447	Right-handed alpha
Helix 43	AE7	B	451	458	Right-handed alpha
Helix 44	AE8	B	458	476	Right-handed alpha
Helix 45	AE9	B	490	506	Right-handed alpha
Helix 46	AF1	B	522	524	Right-handed 310
Helix 47	AF2	B	525	539	Right-handed alpha
Helix 48	AF3	B	549	554	Right-handed alpha
Helix 49	AF4	B	566	570	Right-handed 310
Helix 50	AF5	B	578	585	Right-handed alpha
Helix 51	AF6	B	588	595	Right-handed alpha
Helix 52	AF7	B	646	653	Right-handed alpha
Helix 53	AF8	B	654	664	Right-handed alpha
Helix 54	AF9	B	678	682	Right-handed 310
Helix 55	AG1	B	700	706	Right-handed alpha
Helix 56	AG2	B	706	717	Right-handed alpha
Helix 57	AG3	B	718	725	Right-handed alpha
Helix 58	AG4	B	727	731	Right-handed 310
Helix 59	AG5	B	772	778	Right-handed alpha
Helix 60	AG6	B	784	790	Right-handed alpha
Helix 61	AG7	B	792	800	Right-handed alpha
Helix 62	AG8	B	803	816	Right-handed alpha
Helix 63	AG9	B	826	830	Right-handed 310
Helix 64	AH1	B	831	846	Right-handed alpha
Helix 65	AH2	B	864	881	Right-handed alpha
Helix 66	AH3	B	891	896	Right-handed alpha
Helix 67	AH4	B	908	912	Right-handed 310
Helix 68	AH5	B	920	925	Right-handed alpha
Helix 69	AH6	B	930	940	Right-handed alpha

There are 12 sheets in PDB entry 9GXM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	24	first strand
Strand 2	A	5	11	anti-parallel
Strand 3	A	77	79	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	87	first strand
Strand 2	A	511	514	parallel
Strand 3	A	542	545	parallel
Strand 4	A	28	32	parallel
Strand 5	A	558	561	parallel
Strand 6	A	575	577	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	287	first strand
Strand 2	A	404	407	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	627	632	first strand
Strand 2	A	613	619	anti-parallel
Strand 3	A	675	677	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	684	688	first strand
Strand 2	A	852	857	parallel
Strand 3	A	884	888	parallel
Strand 4	A	636	641	parallel
Strand 5	A	900	905	parallel
Strand 6	A	914	919	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	748	751	first strand
Strand 2	A	759	762	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	24	first strand
Strand 2	B	5	11	anti-parallel
Strand 3	B	77	79	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	87	first strand
Strand 2	B	511	514	parallel
Strand 3	B	542	545	parallel
Strand 4	B	28	32	parallel
Strand 5	B	558	561	parallel
Strand 6	B	575	577	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	287	first strand
Strand 2	B	404	407	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	627	632	first strand
Strand 2	B	613	619	anti-parallel
Strand 3	B	675	677	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	684	688	first strand
Strand 2	B	852	857	parallel
Strand 3	B	884	888	parallel
Strand 4	B	636	641	parallel
Strand 5	B	900	905	parallel
Strand 6	B	914	919	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	748	751	first strand
Strand 2	B	759	762	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GXM

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GXM