Analysis of interatomic Contacts of Structural Units in PDB entry:
9GXR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GXR entry

There are 4 chains in PDB entry 9GXR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 4LEU 940
B
 ASP 4LEU 940
C
 T -1 A 35
D
 T -1 A 35
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 9GXR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 45Right-handed alpha
Helix 2
AA2
A
46 57Right-handed alpha
Helix 3
AA3
A
60 66Right-handed alpha
Helix 4
AA4
A
99 104Right-handed alpha
Helix 5
AA5
A
105 117Right-handed alpha
Helix 6
AA6
A
431 435Right-handed alpha
Helix 7
AA7
A
437 447Right-handed alpha
Helix 8
AA8
A
452 458Right-handed alpha
Helix 9
AA9
A
458 475Right-handed alpha
Helix 10
AB1
A
490 504Right-handed alpha
Helix 11
AB2
A
522 538Right-handed alpha
Helix 12
AB3
A
549 554Right-handed alpha
Helix 13
AB4
A
566 568Right-handed 310
Helix 14
AB5
A
578 585Right-handed alpha
Helix 15
AB6
A
588 596Right-handed alpha
Helix 16
AB7
A
646 664Right-handed alpha
Helix 17
AB8
A
678 682Right-handed 310
Helix 18
AB9
A
700 705Right-handed alpha
Helix 19
AC1
A
706 717Right-handed alpha
Helix 20
AC2
A
718 725Right-handed alpha
Helix 21
AC3
A
727 732Right-handed 310
Helix 22
AC4
A
772 778Right-handed alpha
Helix 23
AC5
A
784 790Right-handed alpha
Helix 24
AC6
A
792 800Right-handed alpha
Helix 25
AC7
A
803 816Right-handed alpha
Helix 26
AC8
A
826 830Right-handed 310
Helix 27
AC9
A
831 845Right-handed alpha
Helix 28
AD1
A
864 881Right-handed alpha
Helix 29
AD2
A
891 897Right-handed alpha
Helix 30
AD3
A
908 912Right-handed 310
Helix 31
AD4
A
920 927Right-handed alpha
Helix 32
AD5
A
930 940Right-handed alpha
Helix 33
AD6
B
38 45Right-handed alpha
Helix 34
AD7
B
46 57Right-handed alpha
Helix 35
AD8
B
60 66Right-handed alpha
Helix 36
AD9
B
99 104Right-handed alpha
Helix 37
AE1
B
105 117Right-handed alpha
Helix 38
AE2
B
431 435Right-handed alpha
Helix 39
AE3
B
437 447Right-handed alpha
Helix 40
AE4
B
452 458Right-handed alpha
Helix 41
AE5
B
458 475Right-handed alpha
Helix 42
AE6
B
490 504Right-handed alpha
Helix 43
AE7
B
522 538Right-handed alpha
Helix 44
AE8
B
549 554Right-handed alpha
Helix 45
AE9
B
566 568Right-handed 310
Helix 46
AF1
B
578 585Right-handed alpha
Helix 47
AF2
B
588 596Right-handed alpha
Helix 48
AF3
B
646 664Right-handed alpha
Helix 49
AF4
B
678 682Right-handed 310
Helix 50
AF5
B
700 705Right-handed alpha
Helix 51
AF6
B
706 717Right-handed alpha
Helix 52
AF7
B
718 725Right-handed alpha
Helix 53
AF8
B
727 732Right-handed 310
Helix 54
AF9
B
772 778Right-handed alpha
Helix 55
AG1
B
784 790Right-handed alpha
Helix 56
AG2
B
792 800Right-handed alpha
Helix 57
AG3
B
803 816Right-handed alpha
Helix 58
AG4
B
826 830Right-handed 310
Helix 59
AG5
B
831 845Right-handed alpha
Helix 60
AG6
B
864 881Right-handed alpha
Helix 61
AG7
B
891 897Right-handed alpha
Helix 62
AG8
B
908 912Right-handed 310
Helix 63
AG9
B
920 927Right-handed alpha
Helix 64
AH1
B
930 940Right-handed alpha
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There are 8 sheets in PDB entry 9GXR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 24first strand
Strand 2
A
5 11anti-parallel
Strand 3
A
77 79anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 86first strand
Strand 2
A
511 515parallel
Strand 3
A
542 546parallel
Strand 4
A
28 32parallel
Strand 5
A
558 564parallel
Strand 6
A
570 577anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
629 632first strand
Strand 2
A
613 619anti-parallel
Strand 3
A
673 677anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
684 688first strand
Strand 2
A
852 857parallel
Strand 3
A
884 888parallel
Strand 4
A
636 641parallel
Strand 5
A
900 905parallel
Strand 6
A
914 919anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 24first strand
Strand 2
B
5 11anti-parallel
Strand 3
B
77 79anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 86first strand
Strand 2
B
511 515parallel
Strand 3
B
542 546parallel
Strand 4
B
28 32parallel
Strand 5
B
558 564parallel
Strand 6
B
570 577anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
629 632first strand
Strand 2
B
613 619anti-parallel
Strand 3
B
673 677anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
684 688first strand
Strand 2
B
852 857parallel
Strand 3
B
884 888parallel
Strand 4
B
636 641parallel
Strand 5
B
900 905parallel
Strand 6
B
914 919anti-parallel
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