Analysis of interatomic Contacts of Structural Units in PDB entry:
9GXT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GXT entry

There are 4 chains in PDB entry 9GXT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 4LEU 940
B
 ASP 4LEU 940
C
 T -1 A 35
D
 T -1 A 35
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 9GXT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 44Right-handed alpha
Helix 2
AA2
A
46 58Right-handed alpha
Helix 3
AA3
A
60 68Right-handed alpha
Helix 4
AA4
A
99 104Right-handed alpha
Helix 5
AA5
A
105 118Right-handed alpha
Helix 6
AA6
A
429 435Right-handed alpha
Helix 7
AA7
A
437 446Right-handed alpha
Helix 8
AA8
A
451 458Right-handed alpha
Helix 9
AA9
A
458 476Right-handed alpha
Helix 10
AB1
A
485 489Right-handed 310
Helix 11
AB2
A
490 504Right-handed alpha
Helix 12
AB3
A
522 538Right-handed alpha
Helix 13
AB4
A
549 555Right-handed alpha
Helix 14
AB5
A
566 570Right-handed 310
Helix 15
AB6
A
578 584Right-handed alpha
Helix 16
AB7
A
588 595Right-handed alpha
Helix 17
AB8
A
647 652Right-handed alpha
Helix 18
AB9
A
654 664Right-handed alpha
Helix 19
AC1
A
678 682Right-handed 310
Helix 20
AC2
A
700 705Right-handed alpha
Helix 21
AC3
A
706 717Right-handed alpha
Helix 22
AC4
A
718 725Right-handed alpha
Helix 23
AC5
A
772 777Right-handed alpha
Helix 24
AC6
A
784 791Right-handed alpha
Helix 25
AC7
A
792 800Right-handed alpha
Helix 26
AC8
A
803 816Right-handed alpha
Helix 27
AC9
A
831 845Right-handed alpha
Helix 28
AD1
A
864 881Right-handed alpha
Helix 29
AD2
A
891 897Right-handed alpha
Helix 30
AD3
A
908 912Right-handed 310
Helix 31
AD4
A
920 925Right-handed alpha
Helix 32
AD5
A
930 940Right-handed alpha
Helix 33
AD6
B
38 44Right-handed alpha
Helix 34
AD7
B
46 58Right-handed alpha
Helix 35
AD8
B
60 68Right-handed alpha
Helix 36
AD9
B
99 104Right-handed alpha
Helix 37
AE1
B
105 118Right-handed alpha
Helix 38
AE2
B
429 435Right-handed alpha
Helix 39
AE3
B
437 446Right-handed alpha
Helix 40
AE4
B
451 458Right-handed alpha
Helix 41
AE5
B
458 475Right-handed alpha
Helix 42
AE6
B
485 489Right-handed 310
Helix 43
AE7
B
490 504Right-handed alpha
Helix 44
AE8
B
522 538Right-handed alpha
Helix 45
AE9
B
549 555Right-handed alpha
Helix 46
AF1
B
566 570Right-handed 310
Helix 47
AF2
B
578 584Right-handed alpha
Helix 48
AF3
B
588 595Right-handed alpha
Helix 49
AF4
B
647 652Right-handed alpha
Helix 50
AF5
B
654 664Right-handed alpha
Helix 51
AF6
B
678 682Right-handed 310
Helix 52
AF7
B
700 705Right-handed alpha
Helix 53
AF8
B
706 717Right-handed alpha
Helix 54
AF9
B
718 725Right-handed alpha
Helix 55
AG1
B
772 777Right-handed alpha
Helix 56
AG2
B
784 791Right-handed alpha
Helix 57
AG3
B
792 800Right-handed alpha
Helix 58
AG4
B
803 816Right-handed alpha
Helix 59
AG5
B
831 845Right-handed alpha
Helix 60
AG6
B
864 881Right-handed alpha
Helix 61
AG7
B
891 897Right-handed alpha
Helix 62
AG8
B
908 912Right-handed 310
Helix 63
AG9
B
920 925Right-handed alpha
Helix 64
AH1
B
930 940Right-handed alpha
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There are 10 sheets in PDB entry 9GXT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 21first strand
Strand 2
A
8 11anti-parallel
Strand 3
A
75 78anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 87first strand
Strand 2
A
511 515parallel
Strand 3
A
542 546parallel
Strand 4
A
28 32parallel
Strand 5
A
558 563parallel
Strand 6
A
572 577anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
627 632first strand
Strand 2
A
613 619anti-parallel
Strand 3
A
675 677anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
684 688first strand
Strand 2
A
852 857parallel
Strand 3
A
884 888parallel
Strand 4
A
636 641parallel
Strand 5
A
900 905parallel
Strand 6
A
914 919anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
748 751first strand
Strand 2
A
759 762anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 21first strand
Strand 2
B
8 11anti-parallel
Strand 3
B
75 78anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 87first strand
Strand 2
B
511 515parallel
Strand 3
B
542 546parallel
Strand 4
B
28 32parallel
Strand 5
B
558 563parallel
Strand 6
B
572 577anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
627 632first strand
Strand 2
B
613 619anti-parallel
Strand 3
B
675 677anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
684 688first strand
Strand 2
B
852 857parallel
Strand 3
B
884 888parallel
Strand 4
B
636 641parallel
Strand 5
B
900 905parallel
Strand 6
B
914 919anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
748 751first strand
Strand 2
B
759 762anti-parallel
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