Analysis of interatomic Contacts of Structural Units in PDB entry:
9GXU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GXU entry

There are 4 chains in PDB entry 9GXU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 4	LEU 940
B	ASP 4	LEU 940
C	C 1	G 33
D	C 1	G 33

There are 78 helices in PDB entry 9GXU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	46	Right-handed alpha
Helix 2	AA2	A	46	57	Right-handed alpha
Helix 3	AA3	A	60	68	Right-handed alpha
Helix 4	AA4	A	99	104	Right-handed alpha
Helix 5	AA5	A	106	118	Right-handed alpha
Helix 6	AA6	A	263	268	Right-handed alpha
Helix 7	AA7	A	271	275	Right-handed 310
Helix 8	AA8	A	289	294	Right-handed alpha
Helix 9	AA9	A	318	332	Right-handed alpha
Helix 10	AB1	A	343	353	Right-handed alpha
Helix 11	AB2	A	378	390	Right-handed alpha
Helix 12	AB3	A	392	402	Right-handed alpha
Helix 13	AB4	A	417	422	Right-handed alpha
Helix 14	AB5	A	429	436	Right-handed alpha
Helix 15	AB6	A	437	447	Right-handed alpha
Helix 16	AB7	A	451	476	Right-handed alpha
Helix 17	AB8	A	490	506	Right-handed alpha
Helix 18	AB9	A	522	539	Right-handed alpha
Helix 19	AC1	A	549	556	Right-handed alpha
Helix 20	AC2	A	566	570	Right-handed 310
Helix 21	AC3	A	578	585	Right-handed alpha
Helix 22	AC4	A	588	595	Right-handed alpha
Helix 23	AC5	A	646	654	Right-handed alpha
Helix 24	AC6	A	654	663	Right-handed alpha
Helix 25	AC7	A	678	682	Right-handed 310
Helix 26	AC8	A	700	706	Right-handed alpha
Helix 27	AC9	A	706	717	Right-handed alpha
Helix 28	AD1	A	718	725	Right-handed alpha
Helix 29	AD2	A	727	731	Right-handed 310
Helix 30	AD3	A	772	777	Right-handed alpha
Helix 31	AD4	A	784	790	Right-handed alpha
Helix 32	AD5	A	792	800	Right-handed alpha
Helix 33	AD6	A	803	816	Right-handed alpha
Helix 34	AD7	A	831	846	Right-handed alpha
Helix 35	AD8	A	864	882	Right-handed alpha
Helix 36	AD9	A	891	898	Right-handed alpha
Helix 37	AE1	A	908	912	Right-handed 310
Helix 38	AE2	A	920	926	Right-handed alpha
Helix 39	AE3	A	930	940	Right-handed alpha
Helix 40	AE4	B	38	46	Right-handed alpha
Helix 41	AE5	B	46	57	Right-handed alpha
Helix 42	AE6	B	60	68	Right-handed alpha
Helix 43	AE7	B	99	104	Right-handed alpha
Helix 44	AE8	B	106	118	Right-handed alpha
Helix 45	AE9	B	263	268	Right-handed alpha
Helix 46	AF1	B	271	275	Right-handed 310
Helix 47	AF2	B	289	294	Right-handed alpha
Helix 48	AF3	B	318	332	Right-handed alpha
Helix 49	AF4	B	343	353	Right-handed alpha
Helix 50	AF5	B	378	390	Right-handed alpha
Helix 51	AF6	B	392	402	Right-handed alpha
Helix 52	AF7	B	417	422	Right-handed alpha
Helix 53	AF8	B	429	436	Right-handed alpha
Helix 54	AF9	B	437	447	Right-handed alpha
Helix 55	AG1	B	451	476	Right-handed alpha
Helix 56	AG2	B	490	506	Right-handed alpha
Helix 57	AG3	B	522	539	Right-handed alpha
Helix 58	AG4	B	549	556	Right-handed alpha
Helix 59	AG5	B	566	570	Right-handed 310
Helix 60	AG6	B	578	585	Right-handed alpha
Helix 61	AG7	B	588	595	Right-handed alpha
Helix 62	AG8	B	646	654	Right-handed alpha
Helix 63	AG9	B	654	663	Right-handed alpha
Helix 64	AH1	B	678	682	Right-handed 310
Helix 65	AH2	B	700	706	Right-handed alpha
Helix 66	AH3	B	706	717	Right-handed alpha
Helix 67	AH4	B	718	725	Right-handed alpha
Helix 68	AH5	B	727	731	Right-handed 310
Helix 69	AH6	B	772	777	Right-handed alpha
Helix 70	AH7	B	784	790	Right-handed alpha
Helix 71	AH8	B	792	800	Right-handed alpha
Helix 72	AH9	B	803	816	Right-handed alpha
Helix 73	AI1	B	831	846	Right-handed alpha
Helix 74	AI2	B	864	882	Right-handed alpha
Helix 75	AI3	B	891	898	Right-handed alpha
Helix 76	AI4	B	908	912	Right-handed 310
Helix 77	AI5	B	920	926	Right-handed alpha
Helix 78	AI6	B	930	940	Right-handed alpha

There are 13 sheets in PDB entry 9GXU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	24	first strand
Strand 2	A	5	11	anti-parallel
Strand 3	A	77	79	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	87	first strand
Strand 2	A	511	515	parallel
Strand 3	A	542	546	parallel
Strand 4	A	28	32	parallel
Strand 5	A	558	563	parallel
Strand 6	A	572	577	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	286	288	first strand
Strand 2	A	403	405	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	359	364	first strand
Strand 2	A	369	374	anti-parallel
Strand 3	B	369	374	anti-parallel
Strand 4	B	359	364	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	627	631	first strand
Strand 2	A	614	619	anti-parallel
Strand 3	A	675	676	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	684	688	first strand
Strand 2	A	852	856	parallel
Strand 3	A	884	887	parallel
Strand 4	A	636	640	parallel
Strand 5	A	900	905	parallel
Strand 6	A	914	919	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	748	751	first strand
Strand 2	A	759	762	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	24	first strand
Strand 2	B	5	11	anti-parallel
Strand 3	B	77	79	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	87	first strand
Strand 2	B	511	515	parallel
Strand 3	B	542	546	parallel
Strand 4	B	28	32	parallel
Strand 5	B	558	563	parallel
Strand 6	B	572	577	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	286	288	first strand
Strand 2	B	403	405	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	627	631	first strand
Strand 2	B	614	619	anti-parallel
Strand 3	B	675	676	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	684	688	first strand
Strand 2	B	852	856	parallel
Strand 3	B	884	887	parallel
Strand 4	B	636	640	parallel
Strand 5	B	900	905	parallel
Strand 6	B	914	919	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	748	751	first strand
Strand 2	B	759	762	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GXU

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GXU