Analysis of interatomic Contacts of Structural Units in PDB entry:
9GY0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GY0 entry

There are 7 chains in PDB entry 9GY0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 371	VAL 1007
B	T 11	G 40
C	C 1	T 23
D	T 1	C 12
E	MET 1	GLU 256
F	MET 1	LYS 254
G	MET 1	PRO 253

There are 46 helices in PDB entry 9GY0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	373	389	Right-handed alpha
Helix 2	AA2	A	389	394	Right-handed alpha
Helix 3	AA3	A	397	409	Right-handed alpha
Helix 4	AA4	A	411	424	Right-handed alpha
Helix 5	AA5	A	443	454	Right-handed alpha
Helix 6	AA6	A	458	462	Right-handed 310
Helix 7	AA7	A	464	472	Right-handed alpha
Helix 8	AA8	A	473	484	Right-handed alpha
Helix 9	AA9	A	492	506	Right-handed alpha
Helix 10	AB1	A	518	532	Right-handed alpha
Helix 11	AB2	A	538	555	Right-handed alpha
Helix 12	AB3	A	572	577	Right-handed alpha
Helix 13	AB4	A	598	622	Right-handed alpha
Helix 14	AB5	A	623	642	Right-handed alpha
Helix 15	AB6	A	646	651	Right-handed alpha
Helix 16	AB7	A	654	659	Right-handed alpha
Helix 17	AB8	A	661	681	Right-handed alpha
Helix 18	AB9	A	682	695	Right-handed alpha
Helix 19	AC1	A	703	717	Right-handed alpha
Helix 20	AC2	A	722	735	Right-handed alpha
Helix 21	AC3	A	740	755	Right-handed alpha
Helix 22	AC4	A	756	760	Right-handed 310
Helix 23	AC5	A	813	825	Right-handed alpha
Helix 24	AC6	A	834	851	Right-handed alpha
Helix 25	AC7	A	874	879	Right-handed alpha
Helix 26	AC8	A	879	892	Right-handed alpha
Helix 27	AC9	A	894	909	Right-handed alpha
Helix 28	AD1	A	924	949	Right-handed alpha
Helix 29	AD2	A	950	955	Right-handed alpha
Helix 30	AD3	A	984	997	Right-handed alpha
Helix 31	AD4	E	9	23	Right-handed alpha
Helix 32	AD5	E	72	80	Right-handed alpha
Helix 33	AD6	E	141	153	Right-handed alpha
Helix 34	AD7	E	209	216	Right-handed alpha
Helix 35	AD8	E	217	222	Right-handed 310
Helix 36	AD9	F	8	19	Right-handed alpha
Helix 37	AE1	F	72	80	Right-handed alpha
Helix 38	AE2	F	141	155	Right-handed alpha
Helix 39	AE3	F	209	215	Right-handed alpha
Helix 40	AE4	G	9	19	Right-handed alpha
Helix 41	AE5	G	54	57	Right-handed 310
Helix 42	AE6	G	71	80	Right-handed alpha
Helix 43	AE7	G	94	96	Right-handed 310
Helix 44	AE8	G	141	155	Right-handed alpha
Helix 45	AE9	G	209	217	Right-handed alpha
Helix 46	AF1	G	218	222	Right-handed 310

There are 14 sheets in PDB entry 9GY0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	429	430	first strand
Strand 2	A	534	537	anti-parallel
Strand 3	A	456	457	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	778	783	first strand
Strand 2	A	1001	1007	parallel
Strand 3	A	970	977	parallel
Strand 4	A	961	965	anti-parallel
Strand 5	A	829	832	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	62	first strand
Strand 2	E	2	6	anti-parallel
Strand 3	E	87	92	anti-parallel
Strand 4	E	99	104	anti-parallel
Strand 5	E	110	115	anti-parallel
Strand 6	G	176	183	anti-parallel
Strand 7	G	166	173	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	25	26	first strand
Strand 2	E	70	71	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	36	first strand
Strand 2	E	46	53	anti-parallel
Strand 3	E	39	40	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	36	first strand
Strand 2	E	46	53	anti-parallel
Strand 3	E	245	251	anti-parallel
Strand 4	E	235	241	anti-parallel
Strand 5	E	224	229	anti-parallel
Strand 6	E	134	140	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	204	208	first strand
Strand 2	E	157	162	anti-parallel
Strand 3	E	166	172	anti-parallel
Strand 4	E	176	183	anti-parallel
Strand 5	F	110	117	anti-parallel
Strand 6	F	98	104	anti-parallel
Strand 7	F	87	91	anti-parallel
Strand 8	F	3	6	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	25	27	first strand
Strand 2	F	69	71	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	29	30	first strand
Strand 2	F	34	40	anti-parallel
Strand 3	F	46	53	anti-parallel
Strand 4	F	245	251	anti-parallel
Strand 5	F	235	240	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	196	197	first strand
Strand 2	F	135	140	anti-parallel
Strand 3	F	224	229	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	177	181	first strand
Strand 2	F	168	172	anti-parallel
Strand 3	F	157	161	anti-parallel
Strand 4	F	204	208	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	2	6	first strand
Strand 2	G	87	92	anti-parallel
Strand 3	G	98	104	anti-parallel
Strand 4	G	115	117	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	35	40	first strand
Strand 2	G	46	52	anti-parallel
Strand 3	G	245	251	anti-parallel
Strand 4	G	235	241	anti-parallel
Strand 5	G	224	229	anti-parallel
Strand 6	G	135	140	anti-parallel
Strand 7	G	196	198	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	157	159	first strand
Strand 2	G	206	208	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GY0

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GY0