Analysis of interatomic Contacts of Structural Units in PDB entry:
9GY2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GY2 entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 9GY2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 43GLY 175
A
 ASN 177PHE 692
B
 ARG 41GLY 175
B
 ASN 177ASP 663
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 9GY2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 48Right-handed 310
Helix 2
AA2
A
60 66Right-handed alpha
Helix 3
AA3
A
109 113Right-handed 310
Helix 4
AA4
A
119 128Right-handed alpha
Helix 5
AA5
A
129 131Right-handed 310
Helix 6
AA6
A
134 140Right-handed alpha
Helix 7
AA7
A
141 143Right-handed 310
Helix 8
AA8
A
152 162Right-handed alpha
Helix 9
AA9
A
175 186Right-handed alpha
Helix 10
AB1
A
208 212Right-handed 310
Helix 11
AB2
A
217 226Right-handed alpha
Helix 12
AB3
A
242 246Right-handed 310
Helix 13
AB4
A
247 252Right-handed alpha
Helix 14
AB5
A
257 264Right-handed alpha
Helix 15
AB6
A
268 278Right-handed alpha
Helix 16
AB7
A
290 294Right-handed 310
Helix 17
AB8
A
301 317Right-handed alpha
Helix 18
AB9
A
319 324Right-handed alpha
Helix 19
AC1
A
364 368Right-handed 310
Helix 20
AC2
A
408 420Right-handed alpha
Helix 21
AC3
A
427 434Right-handed alpha
Helix 22
AC4
A
437 441Right-handed 310
Helix 23
AC5
A
459 468Right-handed alpha
Helix 24
AC6
A
567 569Right-handed 310
Helix 25
AC7
A
598 600Right-handed 310
Helix 26
AC8
A
647 650Right-handed 310
Helix 27
AC9
B
44 48Right-handed 310
Helix 28
AD1
B
60 66Right-handed alpha
Helix 29
AD2
B
109 113Right-handed 310
Helix 30
AD3
B
119 128Right-handed alpha
Helix 31
AD4
B
129 131Right-handed 310
Helix 32
AD5
B
134 140Right-handed alpha
Helix 33
AD6
B
141 143Right-handed 310
Helix 34
AD7
B
152 162Right-handed alpha
Helix 35
AD8
B
175 186Right-handed alpha
Helix 36
AD9
B
208 212Right-handed 310
Helix 37
AE1
B
217 226Right-handed alpha
Helix 38
AE2
B
242 246Right-handed 310
Helix 39
AE3
B
247 252Right-handed alpha
Helix 40
AE4
B
257 264Right-handed alpha
Helix 41
AE5
B
268 278Right-handed alpha
Helix 42
AE6
B
290 294Right-handed 310
Helix 43
AE7
B
301 317Right-handed alpha
Helix 44
AE8
B
319 324Right-handed alpha
Helix 45
AE9
B
364 368Right-handed 310
Helix 46
AF1
B
407 420Right-handed alpha
Helix 47
AF2
B
427 434Right-handed alpha
Helix 48
AF3
B
437 441Right-handed 310
Helix 49
AF4
B
459 468Right-handed alpha
Helix 50
AF5
B
567 569Right-handed 310
Helix 51
AF6
B
647 650Right-handed 310
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There are 14 sheets in PDB entry 9GY2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 232first strand
Strand 2
A
284 287parallel
Strand 3
A
50 56parallel
Strand 4
A
326 332parallel
Strand 5
A
389 392anti-parallel
Strand 6
A
163 165anti-parallel
Strand 7
A
400 402parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 93first strand
Strand 2
A
96 97anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 102first strand
Strand 2
A
145 146parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
349 350first strand
Strand 2
A
356 360anti-parallel
Strand 3
A
538 542parallel
Strand 4
A
523 529anti-parallel
Strand 5
A
559 565anti-parallel
Strand 6
A
571 577anti-parallel
Strand 7
A
666 672anti-parallel
Strand 8
A
652 659anti-parallel
Strand 9
A
615 621anti-parallel
Strand 10
A
629 634anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
490 491first strand
Strand 2
A
679 680anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
498 504first strand
Strand 2
A
510 517anti-parallel
Strand 3
A
546 553anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
590 597first strand
Strand 2
A
602 609anti-parallel
Strand 3
A
638 645anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
229 232first strand
Strand 2
B
284 287parallel
Strand 3
B
50 56parallel
Strand 4
B
326 332parallel
Strand 5
B
389 392anti-parallel
Strand 6
B
163 165anti-parallel
Strand 7
B
400 402parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 93first strand
Strand 2
B
96 97anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 102first strand
Strand 2
B
145 146parallel
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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
349 350first strand
Strand 2
B
356 360anti-parallel
Strand 3
B
538 542parallel
Strand 4
B
523 529anti-parallel
Strand 5
B
559 565anti-parallel
Strand 6
B
571 577anti-parallel
Strand 7
B
666 672anti-parallel
Strand 8
B
652 659anti-parallel
Strand 9
B
615 621anti-parallel
Strand 10
B
629 634anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
490 491first strand
Strand 2
B
679 680anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
498 503first strand
Strand 2
B
510 517anti-parallel
Strand 3
B
546 553anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
590 597first strand
Strand 2
B
602 609anti-parallel
Strand 3
B
638 645anti-parallel
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