Analysis of interatomic Contacts of Structural Units in PDB entry:
9GY7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GY7 entry

There are 6 chains in PDB entry 9GY7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 4	LEU 940
B	ASP 4	LEU 940
C	C -6	G 40
D	C -6	G 40
E	MET 1	LYS 585
F	MET 1	LYS 585

There are118 helices in PDB entry 9GY7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	44	Right-handed alpha
Helix 2	AA2	A	46	58	Right-handed alpha
Helix 3	AA3	A	60	68	Right-handed alpha
Helix 4	AA4	A	99	104	Right-handed alpha
Helix 5	AA5	A	105	118	Right-handed alpha
Helix 6	AA6	A	133	143	Right-handed alpha
Helix 7	AA7	A	165	175	Right-handed alpha
Helix 8	AA8	A	215	231	Right-handed alpha
Helix 9	AA9	A	429	435	Right-handed alpha
Helix 10	AB1	A	437	447	Right-handed alpha
Helix 11	AB2	A	451	476	Right-handed alpha
Helix 12	AB3	A	485	489	Right-handed 310
Helix 13	AB4	A	490	504	Right-handed alpha
Helix 14	AB5	A	522	538	Right-handed alpha
Helix 15	AB6	A	549	555	Right-handed alpha
Helix 16	AB7	A	566	570	Right-handed 310
Helix 17	AB8	A	578	585	Right-handed alpha
Helix 18	AB9	A	588	595	Right-handed alpha
Helix 19	AC1	A	647	652	Right-handed alpha
Helix 20	AC2	A	654	663	Right-handed alpha
Helix 21	AC3	A	678	682	Right-handed 310
Helix 22	AC4	A	700	705	Right-handed alpha
Helix 23	AC5	A	706	717	Right-handed alpha
Helix 24	AC6	A	718	725	Right-handed alpha
Helix 25	AC7	A	727	732	Right-handed 310
Helix 26	AC8	A	774	778	Right-handed 310
Helix 27	AC9	A	784	790	Right-handed alpha
Helix 28	AD1	A	792	800	Right-handed alpha
Helix 29	AD2	A	803	816	Right-handed alpha
Helix 30	AD3	A	826	830	Right-handed 310
Helix 31	AD4	A	831	845	Right-handed alpha
Helix 32	AD5	A	864	881	Right-handed alpha
Helix 33	AD6	A	891	896	Right-handed alpha
Helix 34	AD7	A	908	912	Right-handed 310
Helix 35	AD8	A	920	926	Right-handed alpha
Helix 36	AD9	A	930	938	Right-handed alpha
Helix 37	AE1	B	38	44	Right-handed alpha
Helix 38	AE2	B	46	58	Right-handed alpha
Helix 39	AE3	B	60	68	Right-handed alpha
Helix 40	AE4	B	99	104	Right-handed alpha
Helix 41	AE5	B	105	118	Right-handed alpha
Helix 42	AE6	B	133	143	Right-handed alpha
Helix 43	AE7	B	165	175	Right-handed alpha
Helix 44	AE8	B	215	231	Right-handed alpha
Helix 45	AE9	B	429	435	Right-handed alpha
Helix 46	AF1	B	437	447	Right-handed alpha
Helix 47	AF2	B	451	476	Right-handed alpha
Helix 48	AF3	B	485	489	Right-handed 310
Helix 49	AF4	B	490	504	Right-handed alpha
Helix 50	AF5	B	522	538	Right-handed alpha
Helix 51	AF6	B	549	555	Right-handed alpha
Helix 52	AF7	B	566	570	Right-handed 310
Helix 53	AF8	B	578	585	Right-handed alpha
Helix 54	AF9	B	588	595	Right-handed alpha
Helix 55	AG1	B	647	652	Right-handed alpha
Helix 56	AG2	B	654	663	Right-handed alpha
Helix 57	AG3	B	678	682	Right-handed 310
Helix 58	AG4	B	700	705	Right-handed alpha
Helix 59	AG5	B	706	717	Right-handed alpha
Helix 60	AG6	B	718	725	Right-handed alpha
Helix 61	AG7	B	727	732	Right-handed 310
Helix 62	AG8	B	774	778	Right-handed 310
Helix 63	AG9	B	784	790	Right-handed alpha
Helix 64	AH1	B	792	800	Right-handed alpha
Helix 65	AH2	B	803	816	Right-handed alpha
Helix 66	AH3	B	826	830	Right-handed 310
Helix 67	AH4	B	831	845	Right-handed alpha
Helix 68	AH5	B	864	881	Right-handed alpha
Helix 69	AH6	B	891	896	Right-handed alpha
Helix 70	AH7	B	908	912	Right-handed 310
Helix 71	AH8	B	920	926	Right-handed alpha
Helix 72	AH9	B	930	938	Right-handed alpha
Helix 73	AI1	E	15	30	Right-handed alpha
Helix 74	AI2	E	43	56	Right-handed alpha
Helix 75	AI3	E	65	80	Right-handed alpha
Helix 76	AI4	E	115	132	Right-handed alpha
Helix 77	AI5	E	141	145	Right-handed 310
Helix 78	AI6	E	149	156	Right-handed alpha
Helix 79	AI7	E	167	178	Right-handed alpha
Helix 80	AI8	E	251	277	Right-handed alpha
Helix 81	AI9	E	278	299	Right-handed alpha
Helix 82	AJ1	E	304	307	Right-handed 310
Helix 83	AJ2	E	308	314	Right-handed alpha
Helix 84	AJ3	E	323	328	Right-handed alpha
Helix 85	AJ4	E	338	363	Right-handed alpha
Helix 86	AJ5	E	367	373	Right-handed 310
Helix 87	AJ6	E	377	385	Right-handed alpha
Helix 88	AJ7	E	396	402	Right-handed alpha
Helix 89	AJ8	E	430	443	Right-handed alpha
Helix 90	AJ9	E	455	467	Right-handed alpha
Helix 91	AK1	E	480	492	Right-handed alpha
Helix 92	AK2	E	525	528	Right-handed 310
Helix 93	AK3	E	529	539	Right-handed alpha
Helix 94	AK4	E	540	543	Right-handed 310
Helix 95	AK5	E	556	580	Right-handed alpha
Helix 96	AK6	F	15	30	Right-handed alpha
Helix 97	AK7	F	43	56	Right-handed alpha
Helix 98	AK8	F	65	80	Right-handed alpha
Helix 99	AK9	F	115	132	Right-handed alpha
Helix 100	AL1	F	141	145	Right-handed 310
Helix 101	AL2	F	149	156	Right-handed alpha
Helix 102	AL3	F	167	178	Right-handed alpha
Helix 103	AL4	F	251	277	Right-handed alpha
Helix 104	AL5	F	278	299	Right-handed alpha
Helix 105	AL6	F	304	307	Right-handed 310
Helix 106	AL7	F	308	314	Right-handed alpha
Helix 107	AL8	F	323	328	Right-handed alpha
Helix 108	AL9	F	338	363	Right-handed alpha
Helix 109	AM1	F	367	373	Right-handed 310
Helix 110	AM2	F	377	385	Right-handed alpha
Helix 111	AM3	F	396	402	Right-handed alpha
Helix 112	AM4	F	430	443	Right-handed alpha
Helix 113	AM5	F	455	467	Right-handed alpha
Helix 114	AM6	F	480	492	Right-handed alpha
Helix 115	AM7	F	525	528	Right-handed 310
Helix 116	AM8	F	529	539	Right-handed alpha
Helix 117	AM9	F	540	543	Right-handed 310
Helix 118	AN1	F	556	580	Right-handed alpha

There are 20 sheets in PDB entry 9GY7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	24	first strand
Strand 2	A	5	11	anti-parallel
Strand 3	A	75	78	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	87	first strand
Strand 2	A	511	515	parallel
Strand 3	A	542	546	parallel
Strand 4	A	28	33	parallel
Strand 5	A	558	563	parallel
Strand 6	A	572	577	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	187	first strand
Strand 2	A	178	181	anti-parallel
Strand 3	A	203	210	anti-parallel
Strand 4	A	149	155	anti-parallel
Strand 5	A	233	238	anti-parallel
Strand 6	A	244	247	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	627	632	first strand
Strand 2	A	613	619	anti-parallel
Strand 3	A	675	677	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	684	688	first strand
Strand 2	A	852	857	parallel
Strand 3	A	884	888	parallel
Strand 4	A	636	641	parallel
Strand 5	A	900	905	parallel
Strand 6	A	914	919	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	24	first strand
Strand 2	B	5	11	anti-parallel
Strand 3	B	75	78	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	87	first strand
Strand 2	B	511	515	parallel
Strand 3	B	542	546	parallel
Strand 4	B	28	33	parallel
Strand 5	B	558	563	parallel
Strand 6	B	572	577	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	187	first strand
Strand 2	B	178	181	anti-parallel
Strand 3	B	203	210	anti-parallel
Strand 4	B	149	155	anti-parallel
Strand 5	B	233	238	anti-parallel
Strand 6	B	244	247	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	627	632	first strand
Strand 2	B	613	619	anti-parallel
Strand 3	B	675	677	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	684	688	first strand
Strand 2	B	852	857	parallel
Strand 3	B	884	888	parallel
Strand 4	B	636	641	parallel
Strand 5	B	900	905	parallel
Strand 6	B	914	919	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	84	88	first strand
Strand 2	E	135	139	parallel
Strand 3	E	59	62	parallel
Strand 4	E	333	337	parallel
Strand 5	E	387	391	parallel
Strand 6	E	33	38	parallel
Strand 7	E	405	409	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	99	101	first strand
Strand 2	E	106	108	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	158	160	first strand
Strand 2	E	240	242	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	181	182	first strand
Strand 2	E	191	195	parallel
Strand 3	E	198	202	anti-parallel
Strand 4	E	209	215	anti-parallel
Strand 5	E	220	227	anti-parallel
Strand 6	E	233	236	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	420	424	first strand
Strand 2	E	547	551	parallel
Strand 3	E	513	519	parallel
Strand 4	E	446	450	parallel
Strand 5	E	497	499	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	84	88	first strand
Strand 2	F	135	139	parallel
Strand 3	F	59	62	parallel
Strand 4	F	333	337	parallel
Strand 5	F	387	391	parallel
Strand 6	F	33	38	parallel
Strand 7	F	405	409	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	99	101	first strand
Strand 2	F	106	108	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	158	160	first strand
Strand 2	F	240	242	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	181	182	first strand
Strand 2	F	191	195	parallel
Strand 3	F	198	202	anti-parallel
Strand 4	F	209	215	anti-parallel
Strand 5	F	220	227	anti-parallel
Strand 6	F	233	236	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	420	424	first strand
Strand 2	F	547	551	parallel
Strand 3	F	513	519	parallel
Strand 4	F	446	450	parallel
Strand 5	F	497	499	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GY7

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GY7