Analysis of interatomic Contacts of Structural Units in PDB entry:
9GYB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GYB entry

There are 6 chains in PDB entry 9GYB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 18	LEU 637
B	MET 18	LEU 637
C	MET 18	LEU 637
D	GLU 17	LEU 637
E	LEU 21	LEU 637
F	LEU 21	LEU 637

There are182 helices in PDB entry 9GYB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	37	Right-handed alpha
Helix 2	AA2	A	42	47	Right-handed alpha
Helix 3	AA3	A	75	112	Right-handed alpha
Helix 4	AA4	A	121	131	Right-handed alpha
Helix 5	AA5	A	140	155	Right-handed alpha
Helix 6	AA6	A	165	172	Right-handed alpha
Helix 7	AA7	A	173	183	Right-handed alpha
Helix 8	AA8	A	189	201	Right-handed alpha
Helix 9	AA9	A	208	239	Right-handed alpha
Helix 10	AB1	A	249	253	Right-handed 310
Helix 11	AB2	A	266	280	Right-handed alpha
Helix 12	AB3	A	280	287	Right-handed alpha
Helix 13	AB4	A	298	310	Right-handed alpha
Helix 14	AB5	A	321	326	Right-handed alpha
Helix 15	AB6	A	342	347	Right-handed alpha
Helix 16	AB7	A	372	374	Right-handed 310
Helix 17	AB8	A	375	391	Right-handed alpha
Helix 18	AB9	A	392	394	Right-handed 310
Helix 19	AC1	A	395	399	Right-handed 310
Helix 20	AC2	A	413	423	Right-handed alpha
Helix 21	AC3	A	430	439	Right-handed alpha
Helix 22	AC4	A	459	472	Right-handed alpha
Helix 23	AC5	A	480	489	Right-handed alpha
Helix 24	AC6	A	493	501	Right-handed alpha
Helix 25	AC7	A	502	516	Right-handed alpha
Helix 26	AC8	A	533	548	Right-handed alpha
Helix 27	AC9	A	566	579	Right-handed alpha
Helix 28	AD1	A	594	603	Right-handed alpha
Helix 29	AD2	A	604	609	Right-handed alpha
Helix 30	AD3	A	618	636	Right-handed alpha
Helix 31	AD4	B	29	36	Right-handed alpha
Helix 32	AD5	B	41	47	Right-handed alpha
Helix 33	AD6	B	75	111	Right-handed alpha
Helix 34	AD7	B	121	133	Right-handed alpha
Helix 35	AD8	B	140	155	Right-handed alpha
Helix 36	AD9	B	165	172	Right-handed alpha
Helix 37	AE1	B	173	183	Right-handed alpha
Helix 38	AE2	B	189	201	Right-handed alpha
Helix 39	AE3	B	208	239	Right-handed alpha
Helix 40	AE4	B	249	253	Right-handed 310
Helix 41	AE5	B	266	280	Right-handed alpha
Helix 42	AE6	B	280	287	Right-handed alpha
Helix 43	AE7	B	299	310	Right-handed alpha
Helix 44	AE8	B	317	320	Right-handed 310
Helix 45	AE9	B	321	326	Right-handed alpha
Helix 46	AF1	B	342	349	Right-handed alpha
Helix 47	AF2	B	375	393	Right-handed alpha
Helix 48	AF3	B	394	399	Right-handed 310
Helix 49	AF4	B	413	422	Right-handed alpha
Helix 50	AF5	B	430	439	Right-handed alpha
Helix 51	AF6	B	459	472	Right-handed alpha
Helix 52	AF7	B	479	488	Right-handed alpha
Helix 53	AF8	B	493	501	Right-handed alpha
Helix 54	AF9	B	502	516	Right-handed alpha
Helix 55	AG1	B	533	548	Right-handed alpha
Helix 56	AG2	B	566	580	Right-handed alpha
Helix 57	AG3	B	594	603	Right-handed alpha
Helix 58	AG4	B	604	609	Right-handed alpha
Helix 59	AG5	B	618	636	Right-handed alpha
Helix 60	AG6	C	29	37	Right-handed alpha
Helix 61	AG7	C	41	47	Right-handed alpha
Helix 62	AG8	C	75	110	Right-handed alpha
Helix 63	AG9	C	121	132	Right-handed alpha
Helix 64	AH1	C	143	155	Right-handed alpha
Helix 65	AH2	C	165	172	Right-handed alpha
Helix 66	AH3	C	173	184	Right-handed alpha
Helix 67	AH4	C	189	201	Right-handed alpha
Helix 68	AH5	C	208	239	Right-handed alpha
Helix 69	AH6	C	249	253	Right-handed 310
Helix 70	AH7	C	266	280	Right-handed alpha
Helix 71	AH8	C	280	287	Right-handed alpha
Helix 72	AH9	C	299	310	Right-handed alpha
Helix 73	AI1	C	317	320	Right-handed 310
Helix 74	AI2	C	321	326	Right-handed alpha
Helix 75	AI3	C	342	349	Right-handed alpha
Helix 76	AI4	C	372	374	Right-handed 310
Helix 77	AI5	C	375	392	Right-handed alpha
Helix 78	AI6	C	393	394	Right-handed 310
Helix 79	AI7	C	395	399	Right-handed 310
Helix 80	AI8	C	413	423	Right-handed alpha
Helix 81	AI9	C	430	439	Right-handed alpha
Helix 82	AJ1	C	459	472	Right-handed alpha
Helix 83	AJ2	C	479	490	Right-handed alpha
Helix 84	AJ3	C	493	501	Right-handed alpha
Helix 85	AJ4	C	502	515	Right-handed alpha
Helix 86	AJ5	C	533	548	Right-handed alpha
Helix 87	AJ6	C	566	580	Right-handed alpha
Helix 88	AJ7	C	594	603	Right-handed alpha
Helix 89	AJ8	C	603	609	Right-handed alpha
Helix 90	AJ9	C	618	634	Right-handed alpha
Helix 91	AK1	D	29	36	Right-handed alpha
Helix 92	AK2	D	41	47	Right-handed alpha
Helix 93	AK3	D	75	111	Right-handed alpha
Helix 94	AK4	D	121	132	Right-handed alpha
Helix 95	AK5	D	140	155	Right-handed alpha
Helix 96	AK6	D	165	172	Right-handed alpha
Helix 97	AK7	D	173	184	Right-handed alpha
Helix 98	AK8	D	189	201	Right-handed alpha
Helix 99	AK9	D	208	239	Right-handed alpha
Helix 100	AL1	D	249	253	Right-handed 310
Helix 101	AL2	D	266	280	Right-handed alpha
Helix 102	AL3	D	280	286	Right-handed alpha
Helix 103	AL4	D	299	310	Right-handed alpha
Helix 104	AL5	D	317	320	Right-handed 310
Helix 105	AL6	D	321	326	Right-handed alpha
Helix 106	AL7	D	342	347	Right-handed alpha
Helix 107	AL8	D	372	374	Right-handed 310
Helix 108	AL9	D	375	392	Right-handed alpha
Helix 109	AM1	D	393	394	Right-handed 310
Helix 110	AM2	D	395	399	Right-handed 310
Helix 111	AM3	D	413	421	Right-handed alpha
Helix 112	AM4	D	429	439	Right-handed alpha
Helix 113	AM5	D	459	471	Right-handed alpha
Helix 114	AM6	D	479	488	Right-handed alpha
Helix 115	AM7	D	494	501	Right-handed alpha
Helix 116	AM8	D	502	516	Right-handed alpha
Helix 117	AM9	D	533	548	Right-handed alpha
Helix 118	AN1	D	566	580	Right-handed alpha
Helix 119	AN2	D	594	603	Right-handed alpha
Helix 120	AN3	D	604	610	Right-handed alpha
Helix 121	AN4	D	618	636	Right-handed alpha
Helix 122	AN5	E	30	36	Right-handed alpha
Helix 123	AN6	E	41	47	Right-handed alpha
Helix 124	AN7	E	75	111	Right-handed alpha
Helix 125	AN8	E	121	133	Right-handed alpha
Helix 126	AN9	E	140	155	Right-handed alpha
Helix 127	AO1	E	165	172	Right-handed alpha
Helix 128	AO2	E	173	180	Right-handed alpha
Helix 129	AO3	E	189	201	Right-handed alpha
Helix 130	AO4	E	208	239	Right-handed alpha
Helix 131	AO5	E	249	253	Right-handed 310
Helix 132	AO6	E	266	280	Right-handed alpha
Helix 133	AO7	E	280	287	Right-handed alpha
Helix 134	AO8	E	299	308	Right-handed alpha
Helix 135	AO9	E	317	320	Right-handed 310
Helix 136	AP1	E	321	326	Right-handed alpha
Helix 137	AP2	E	375	391	Right-handed alpha
Helix 138	AP3	E	413	422	Right-handed alpha
Helix 139	AP4	E	430	435	Right-handed alpha
Helix 140	AP5	E	459	471	Right-handed alpha
Helix 141	AP6	E	479	487	Right-handed alpha
Helix 142	AP7	E	494	501	Right-handed alpha
Helix 143	AP8	E	502	515	Right-handed alpha
Helix 144	AP9	E	530	533	Right-handed 310
Helix 145	AQ1	E	534	546	Right-handed alpha
Helix 146	AQ2	E	551	555	Right-handed 310
Helix 147	AQ3	E	566	580	Right-handed alpha
Helix 148	AQ4	E	594	601	Right-handed alpha
Helix 149	AQ5	E	604	609	Right-handed alpha
Helix 150	AQ6	E	618	636	Right-handed alpha
Helix 151	AQ7	F	29	36	Right-handed alpha
Helix 152	AQ8	F	41	46	Right-handed alpha
Helix 153	AQ9	F	75	109	Right-handed alpha
Helix 154	AR1	F	121	132	Right-handed alpha
Helix 155	AR2	F	140	154	Right-handed alpha
Helix 156	AR3	F	155	157	Right-handed 310
Helix 157	AR4	F	165	172	Right-handed alpha
Helix 158	AR5	F	173	183	Right-handed alpha
Helix 159	AR6	F	189	201	Right-handed alpha
Helix 160	AR7	F	208	239	Right-handed alpha
Helix 161	AR8	F	249	254	Right-handed 310
Helix 162	AR9	F	266	280	Right-handed alpha
Helix 163	AS1	F	280	288	Right-handed alpha
Helix 164	AS2	F	299	308	Right-handed alpha
Helix 165	AS3	F	317	325	Right-handed 310
Helix 166	AS4	F	342	347	Right-handed alpha
Helix 167	AS5	F	372	374	Right-handed 310
Helix 168	AS6	F	375	390	Right-handed alpha
Helix 169	AS7	F	391	394	Right-handed 310
Helix 170	AS8	F	395	399	Right-handed 310
Helix 171	AS9	F	413	422	Right-handed alpha
Helix 172	AT1	F	430	438	Right-handed alpha
Helix 173	AT2	F	459	471	Right-handed alpha
Helix 174	AT3	F	480	487	Right-handed alpha
Helix 175	AT4	F	496	501	Right-handed alpha
Helix 176	AT5	F	502	513	Right-handed alpha
Helix 177	AT6	F	531	533	Right-handed 310
Helix 178	AT7	F	534	546	Right-handed alpha
Helix 179	AT8	F	566	576	Right-handed alpha
Helix 180	AT9	F	594	603	Right-handed alpha
Helix 181	AU1	F	604	610	Right-handed alpha
Helix 182	AU2	F	618	635	Right-handed alpha

There are 22 sheets in PDB entry 9GYB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	248	first strand
Strand 2	A	406	410	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	293	297	first strand
Strand 2	A	258	263	parallel
Strand 3	A	329	334	parallel
Strand 4	A	353	356	parallel
Strand 5	A	367	368	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	525	529	first strand
Strand 2	A	474	479	parallel
Strand 3	A	444	448	parallel
Strand 4	A	557	561	parallel
Strand 5	A	582	585	parallel
Strand 6	A	612	615	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	244	248	first strand
Strand 2	B	406	410	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	313	315	first strand
Strand 2	B	293	298	parallel
Strand 3	B	258	263	parallel
Strand 4	B	331	334	parallel
Strand 5	B	353	356	parallel
Strand 6	B	367	368	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	474	478	first strand
Strand 2	B	444	448	parallel
Strand 3	B	557	561	parallel
Strand 4	B	582	585	parallel
Strand 5	B	612	615	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	50	first strand
Strand 2	C	58	59	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	244	248	first strand
Strand 2	C	406	410	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	313	315	first strand
Strand 2	C	293	298	parallel
Strand 3	C	258	264	parallel
Strand 4	C	331	334	parallel
Strand 5	C	353	356	parallel
Strand 6	C	367	368	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	525	527	first strand
Strand 2	C	474	478	parallel
Strand 3	C	444	448	parallel
Strand 4	C	557	561	parallel
Strand 5	C	582	585	parallel
Strand 6	C	612	615	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	49	50	first strand
Strand 2	D	58	59	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	244	248	first strand
Strand 2	D	406	410	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	313	315	first strand
Strand 2	D	293	298	parallel
Strand 3	D	258	263	parallel
Strand 4	D	331	334	parallel
Strand 5	D	353	356	parallel
Strand 6	D	367	368	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	525	527	first strand
Strand 2	D	474	478	parallel
Strand 3	D	444	448	parallel
Strand 4	D	557	561	parallel
Strand 5	D	582	585	parallel
Strand 6	D	612	615	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	49	50	first strand
Strand 2	E	58	59	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	244	247	first strand
Strand 2	E	407	410	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	313	315	first strand
Strand 2	E	295	298	parallel
Strand 3	E	260	263	parallel
Strand 4	E	331	334	parallel
Strand 5	E	353	356	parallel
Strand 6	E	367	368	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	444	448	first strand
Strand 2	E	474	478	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	559	561	first strand
Strand 2	E	583	585	parallel
Strand 3	E	613	615	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	246	248	first strand
Strand 2	F	406	408	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	313	315	first strand
Strand 2	F	293	298	parallel
Strand 3	F	258	263	parallel
Strand 4	F	331	334	parallel
Strand 5	F	353	356	parallel
Strand 6	F	367	368	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	525	529	first strand
Strand 2	F	475	479	parallel
Strand 3	F	445	448	parallel
Strand 4	F	557	561	parallel
Strand 5	F	583	585	parallel
Strand 6	F	613	615	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GYB

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GYB