Analysis of interatomic Contacts of Structural Units in PDB entry:
9GYE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GYE entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 2 chains in PDB entry 9GYE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 45PRO 177
A
 ASN 179THR 730
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 9GYE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 51Right-handed 310
Helix 2
AA2
A
63 69Right-handed alpha
Helix 3
AA3
A
121 130Right-handed alpha
Helix 4
AA4
A
131 133Right-handed 310
Helix 5
AA5
A
136 141Right-handed alpha
Helix 6
AA6
A
142 145Right-handed 310
Helix 7
AA7
A
154 164Right-handed alpha
Helix 8
AA8
A
177 187Right-handed alpha
Helix 9
AA9
A
220 229Right-handed alpha
Helix 10
AB1
A
244 249Right-handed alpha
Helix 11
AB2
A
267 271Right-handed 310
Helix 12
AB3
A
272 277Right-handed alpha
Helix 13
AB4
A
282 288Right-handed alpha
Helix 14
AB5
A
293 303Right-handed alpha
Helix 15
AB6
A
325 341Right-handed alpha
Helix 16
AB7
A
343 348Right-handed alpha
Helix 17
AB8
A
423 435Right-handed alpha
Helix 18
AB9
A
442 449Right-handed alpha
Helix 19
AC1
A
467 472Right-handed alpha
Helix 20
AC2
A
472 488Right-handed alpha
Helix 21
AC3
A
621 626Right-handed 310
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There are 7 sheets in PDB entry 9GYE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 235first strand
Strand 2
A
309 312parallel
Strand 3
A
53 59parallel
Strand 4
A
350 356parallel
Strand 5
A
404 407anti-parallel
Strand 6
A
165 167anti-parallel
Strand 7
A
416 417parallel
Strand 8
A
512 514parallel
Strand 9
A
719 720anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 95first strand
Strand 2
A
99 100anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 104first strand
Strand 2
A
147 148parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
520 526first strand
Strand 2
A
533 539anti-parallel
Strand 3
A
587 591anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
567 572first strand
Strand 2
A
553 560anti-parallel
Strand 3
A
602 606anti-parallel
Strand 4
A
613 618anti-parallel
Strand 5
A
707 712anti-parallel
Strand 6
A
691 698anti-parallel
Strand 7
A
653 659anti-parallel
Strand 8
A
669 673anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
576 577first strand
Strand 2
A
583 584anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
629 635first strand
Strand 2
A
641 647anti-parallel
Strand 3
A
677 683anti-parallel
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