Analysis of interatomic Contacts of Structural Units in PDB entry:
9GYG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GYG entry

There are 4 chains in PDB entry 9GYG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 7VAL 287
A
 SER 289CYS 688
B
 ALA 7VAL 287
B
 SER 289CYS 688
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 33 helices in PDB entry 9GYG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
129 136Right-handed alpha
Helix 2
AA2
A
158 174Right-handed alpha
Helix 3
AA3
A
212 229Right-handed alpha
Helix 4
AA4
A
264 278Right-handed alpha
Helix 5
AA5
A
292 303Right-handed alpha
Helix 6
AA6
A
310 320Right-handed alpha
Helix 7
AA7
A
325 327Right-handed 310
Helix 8
AA8
A
337 348Right-handed alpha
Helix 9
AA9
A
356 367Right-handed alpha
Helix 10
AB1
A
397 408Right-handed alpha
Helix 11
AB2
A
426 446Right-handed alpha
Helix 12
AB3
A
472 488Right-handed alpha
Helix 13
AB4
A
500 505Right-handed alpha
Helix 14
AB5
A
523 534Right-handed alpha
Helix 15
AB6
A
554 556Right-handed 310
Helix 16
AB7
A
557 562Right-handed alpha
Helix 17
AB8
B
129 136Right-handed alpha
Helix 18
AB9
B
158 173Right-handed alpha
Helix 19
AC1
B
212 225Right-handed alpha
Helix 20
AC2
B
264 278Right-handed alpha
Helix 21
AC3
B
292 303Right-handed alpha
Helix 22
AC4
B
310 320Right-handed alpha
Helix 23
AC5
B
325 327Right-handed 310
Helix 24
AC6
B
337 348Right-handed alpha
Helix 25
AC7
B
356 367Right-handed alpha
Helix 26
AC8
B
397 408Right-handed alpha
Helix 27
AC9
B
426 446Right-handed alpha
Helix 28
AD1
B
472 488Right-handed alpha
Helix 29
AD2
B
500 505Right-handed alpha
Helix 30
AD3
B
523 534Right-handed alpha
Helix 31
AD4
B
554 556Right-handed 310
Helix 32
AD5
B
557 562Right-handed alpha
Helix 33
AD6
B
670 674Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 9GYG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 177first strand
Strand 2
A
678 683parallel
Strand 3
A
259 263parallel
Strand 4
A
509 521anti-parallel
Strand 5
A
654 658anti-parallel
Strand 6
A
569 570anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 177first strand
Strand 2
A
678 683parallel
Strand 3
A
259 263parallel
Strand 4
A
509 521anti-parallel
Strand 5
A
542 548anti-parallel
Strand 6
A
624 630parallel
Strand 7
A
644 647anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 286first strand
Strand 2
A
305 308parallel
Strand 3
A
329 331parallel
Strand 4
A
351 354parallel
Strand 5
A
371 375parallel
Strand 6
A
412 416parallel
Strand 7
A
452 454parallel
Strand 8
A
494 497parallel
Strand 9
A
281 286parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 177first strand
Strand 2
B
678 683parallel
Strand 3
B
259 263parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
281 286first strand
Strand 2
B
305 308parallel
Strand 3
B
329 331parallel
Strand 4
B
351 354parallel
Strand 5
B
371 375parallel
Strand 6
B
412 416parallel
Strand 7
B
452 454parallel
Strand 8
B
494 497parallel
Strand 9
B
281 286parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
569 570first strand
Strand 2
B
654 658anti-parallel
Strand 3
B
509 520anti-parallel
Strand 4
B
543 548anti-parallel
Strand 5
B
624 630parallel
Strand 6
B
644 647anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il