Analysis of interatomic Contacts of Structural Units in PDB entry:
9GYI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GYI entry

There are 4 chains in PDB entry 9GYI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	SER 93	ASP 383
C	SER 93	ASP 383
D	SER 93	ASP 383
A	SER 93	ASP 383

There are 35 helices in PDB entry 9GYI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	120	126	Right-handed alpha
Helix 2	AA2	B	182	188	Right-handed alpha
Helix 3	AA3	B	191	214	Right-handed alpha
Helix 4	AA4	B	256	266	Right-handed alpha
Helix 5	AA5	B	267	274	Right-handed alpha
Helix 6	AA6	B	279	288	Right-handed alpha
Helix 7	AA7	B	291	295	Right-handed 310
Helix 8	AA8	B	330	335	Right-handed alpha
Helix 9	AA9	B	371	373	Right-handed 310
Helix 10	AB1	C	96	100	Right-handed 310
Helix 11	AB2	C	120	126	Right-handed alpha
Helix 12	AB3	C	182	188	Right-handed alpha
Helix 13	AB4	C	191	215	Right-handed alpha
Helix 14	AB5	C	256	266	Right-handed alpha
Helix 15	AB6	C	267	273	Right-handed alpha
Helix 16	AB7	C	279	289	Right-handed alpha
Helix 17	AB8	C	330	335	Right-handed alpha
Helix 18	AB9	C	371	373	Right-handed 310
Helix 19	AC1	D	120	126	Right-handed alpha
Helix 20	AC2	D	182	188	Right-handed alpha
Helix 21	AC3	D	191	215	Right-handed alpha
Helix 22	AC4	D	256	266	Right-handed alpha
Helix 23	AC5	D	267	273	Right-handed alpha
Helix 24	AC6	D	279	288	Right-handed alpha
Helix 25	AC7	D	330	335	Right-handed alpha
Helix 26	AC8	D	371	373	Right-handed 310
Helix 27	AC9	A	120	126	Right-handed alpha
Helix 28	AD1	A	182	187	Right-handed alpha
Helix 29	AD2	A	191	212	Right-handed alpha
Helix 30	AD3	A	248	253	Right-handed alpha
Helix 31	AD4	A	256	266	Right-handed alpha
Helix 32	AD5	A	267	272	Right-handed alpha
Helix 33	AD6	A	279	288	Right-handed alpha
Helix 34	AD7	A	330	334	Right-handed alpha
Helix 35	AD8	A	371	373	Right-handed 310

There are 15 sheets in PDB entry 9GYI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	108	first strand
Strand 2	C	135	143	parallel
Strand 3	C	163	176	anti-parallel
Strand 4	C	356	368	anti-parallel
Strand 5	C	336	349	anti-parallel
Strand 6	C	127	131	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	108	first strand
Strand 2	C	135	143	parallel
Strand 3	C	163	176	anti-parallel
Strand 4	C	356	368	anti-parallel
Strand 5	C	179	181	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	131	first strand
Strand 2	B	336	340	parallel
Strand 3	B	364	368	anti-parallel
Strand 4	B	172	173	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	135	143	first strand
Strand 2	B	163	170	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	181	first strand
Strand 2	B	356	362	anti-parallel
Strand 3	B	345	349	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	230	first strand
Strand 2	B	242	245	parallel
Strand 3	B	375	379	parallel
Strand 4	B	325	329	anti-parallel
Strand 5	B	275	278	anti-parallel
Strand 6	B	313	317	parallel
Strand 7	B	309	310	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	229	230	first strand
Strand 2	C	242	245	parallel
Strand 3	C	375	379	parallel
Strand 4	C	325	329	anti-parallel
Strand 5	C	275	278	anti-parallel
Strand 6	C	315	317	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	131	first strand
Strand 2	D	336	340	parallel
Strand 3	D	356	368	anti-parallel
Strand 4	D	179	181	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	172	176	first strand
Strand 2	D	356	368	anti-parallel
Strand 3	D	344	349	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	135	141	first strand
Strand 2	D	164	170	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	229	230	first strand
Strand 2	D	242	245	parallel
Strand 3	D	375	379	parallel
Strand 4	D	325	329	anti-parallel
Strand 5	D	275	278	anti-parallel
Strand 6	D	313	317	parallel
Strand 7	D	309	310	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	128	first strand
Strand 2	A	335	339	parallel
Strand 3	A	363	369	anti-parallel
Strand 4	A	172	174	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	135	143	first strand
Strand 2	A	163	170	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	181	first strand
Strand 2	A	356	358	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	229	230	first strand
Strand 2	A	242	245	parallel
Strand 3	A	375	379	parallel
Strand 4	A	325	329	anti-parallel
Strand 5	A	275	278	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GYI

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GYI